Neodiprion virginianus: 124300926
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Entry
124300926 CDS
T09046
Name
(RefSeq) ATP-dependent RNA helicase Ddx1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
nvg
Neodiprion virginianus
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nvg03041
]
124300926
03016 Transfer RNA biogenesis [BR:
nvg03016
]
124300926
Enzymes [BR:
nvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124300926
Spliceosome [BR:
nvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124300926
Transfer RNA biogenesis [BR:
nvg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124300926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124300926
NCBI-ProteinID:
XP_046611384
LinkDB
All DBs
Position
3:complement(41769474..41802231)
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AA seq
733 aa
AA seq
DB search
MTAFEEMGVLPEIAKAVEDMDWMLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQTVWETLKDIESGKATTSKASPQSSPHWTMSLFDRGRALAVTPDGLRCQSREQREWHGC
RATKGVQGSGKFYYEATVTDEGLCRVGWSMPQANLDLGTDKFGFGFGGTGKKSNAKQFDS
YGEPFGMHDVIGCLLDLTNAEIRFTKNGVDLGQAFSLNAQQKSSIFFPAVVLKNAEMAFN
FGAQPFKHSPPEGYIAISAAPKSSTRDNTVSGNRQSGVDNLKPANNAPQTIIIEPSRELA
EQTFNQIQKFKKHLDNPKVRELLLIGGVNVKEQISALNSGIDIVVGTPGRLEDLIQGGYL
SLTHCRFFVLDEADGLLKQGYTELIDRLHRQIPKITCDGRRLQMIVCSATLHAFEVKKLA
DRLMHFPTWVDLKGEDAVPETVHHVVVMVDPQKDKSWQSLRTHIRTDGVHYRDNVKPGNN
TAETLSEAVKILKGEYCVSAIREHKMDRAIIFCRTKIDCDNLESYLKSIGRNEFTCVCLH
GDRKPQERKANLEKFKRQEVKFLICTDVAARGLDITGLPFMINITLPDEKSNYVHRIGRV
GRAERMGLAISLVSSVPEKVWYHGEWCSSRGRNCSNTNLTDQGGCCIWYNEPRYLGEIED
HLNVTIQQVGPDIKVPLNEFDGKVTYGEKKVNSGTGYQNHVAQMAPAVSQLAGLESKAQL
IYLRRHMNVGKSV
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgacagcattcgaagaaatgggcgtactgcctgagatagccaaagcagttgaagacatg
gattggatgttgccaacagatgttcaagctgaagcgattcccctaattttaggaggagga
gatgtattgatggctgcagaaactggtagtggtaaaactggtgccttctgtttaccaatc
cttcaaactgtatgggaaactctgaaggatatcgaatctggaaaagcaacgacctccaaa
gccagtccacagtcctccccacactggacgatgagtttatttgataggggccgagcgctt
gccgttactccggatggtttgcgatgtcaaagtcgtgaacaacgcgaatggcatggctgt
cgtgcaaccaaaggtgtacagggtagtgggaaattctattatgaagctactgtgactgat
gaaggtctttgtcgtgttggatggtctatgccacaggcaaacttggatctgggaaccgat
aagtttggatttggttttggtggaactggtaagaagtcgaatgccaagcagtttgatagt
tatggagagccgtttgggatgcatgatgtgattggctgcctgttagatttaaccaatgct
gaaattcgttttactaaaaatggtgttgatttgggccaagcgttttctttgaacgcgcaa
caaaaatcttccatattcttccccgcggttgtattgaaaaatgctgaaatggcattcaac
tttggagctcaacccttcaaacactcgccacccgaaggctacatcgctatttccgcagct
ccaaagtcttctactcgagacaatactgtttccggaaatagacaaagtggtgtcgataat
ttgaaaccagccaacaacgctccacagaccataatcattgagccgtctcgcgaattggct
gagcaaactttcaatcagatacaaaagtttaagaaacatttggataatccaaaagtacgg
gagctcctgttgattggaggagtaaatgtcaaggaacagatttctgcattgaattcgggg
attgatatcgttgtgggaacacctggccgattagaagacctgatacaaggtggctacttg
tctttgactcattgcagattcttcgtgctcgatgaagctgatggcttattgaagcaagga
tataccgagcttattgatagactgcatcgacaaattccaaaaattacatgtgatggtaga
agattgcagatgatcgtctgttcggccactttacacgccttcgaagttaaaaaactcgcg
gatcgtttgatgcacttcccaacctgggttgacctcaagggcgaagatgcagttccagag
acagtccatcatgtcgttgtcatggtggacccccagaaagacaaatcctggcagtcgttg
agaacacacattcgcacggatggagtacattacagggataatgtcaaaccaggaaataat
accgcagagacactttctgaagctgttaaaattttgaaaggagaatactgtgtcagtgcc
ataagagagcacaagatggaccgtgctattattttctgcaggactaagatcgattgtgat
aatttggagtcttatttaaagagtatcggccgtaatgagtttacatgtgtctgccttcac
ggagatcgtaagccacaagagcgaaaagcgaacttagaaaaatttaagcgtcaagaagtg
aagtttttaatttgtacggacgtcgctgccagaggattggacattaccggtcttcccttc
atgatcaacatcaccctaccagacgaaaaatcaaattacgtacaccggatcggcagagtg
ggtagagctgaacgaatgggtttggctatttctttagtaagcagtgtaccggaaaaagtt
tggtatcacggcgaatggtgttcctccagaggcaggaattgcagcaacacaaatctgact
gatcaaggtggctgttgcatctggtataacgagccaagatacttgggagaaattgaagat
catttgaatgtgacaattcagcaagtaggtccagatatcaaggttcctttgaacgagttc
gacggtaaagttacttacggagaaaaaaaagttaatagcggaactggataccaaaaccat
gtggcacaaatggctccagccgtatctcaattggcaggactggaatcaaaagcacagctt
atttatttgaggaggcatatgaatgttggaaaatcggtttag
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