Neodiprion virginianus: 124302113
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Entry
124302113 CDS
T09046
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
nvg
Neodiprion virginianus
Pathway
nvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124302113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124302113
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
124302113
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
124302113
NCBI-ProteinID:
XP_046613866
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Position
4:36390789..36394971
Genome browser
AA seq
908 aa
AA seq
DB search
MSTDTSIEPGHKSRNDSEPQDESANAQGVEVIEILPGFTNFDDFVNVGFEALKTGIKAAN
GLPSGEKYDYYKCFPTFRNIINEEINNVLVCMQNITEGVGVRGNIRRRDIEEKFELLIEA
NDILLERAGICMDEASGILRNPDVEFVVSQSNSTAVSGSWNNLSFHSKTQQTQPANKAQA
ICLLTAKNIQRPQLKFDDKIDNSIKPWQPRIKDKPNSLKPLALYVEEDEDGEFFSHPYEF
ELDRFEAPEHQLESRVPVEYKHIDDTSLIVIEKPEDIKILLDDLSKYTEIAVDLEHHSYR
SFQGITCLMQISTKDTDYLVDTLSLRSELHQLNEIFTKPSILKVFHGAGSDIEWLQRDLS
LYIVNMFDTHIAAKQLNFPYLSLAHLMKRYCDIDPNKHFQLADWRVRPLPEELMKYARED
THYLLYIKDNLMNALLEQANGQSNILKAVYDRSTDVCKKIYRKPVWSEEKCMNLYRKSKK
MFNNRQLYALRELHKWRDATGRAEDDSTGYVLPNHMLLNIAESLPREMQGILACCNPIPP
LVRQNALSLHKIILKAKEQPMVKPILEDDIRQRMTQRNQVTDLETTLLYSPHDMPHDMEI
RADLPCLLDLNSSSEINVTEQTIPHTVTVFDSPPQSEDENTTGHITRKKRRTPFISPFER
YKRVVPMVAAEEAKERERQEKEEAERIKLVENSGNEIAESKNRVYKHFKDVVGAVTNPVS
VQQSAGSSSNQSIDSKQFGPDHKTLSQMQGRKRKRQSNYHDDTKLTESQDDLSTPLPFLH
KKFTQNYRRDKRELNSPTQGVKKQKKSYHDTGHSSFTEDTELSANNALSVKSLRNNKKKS
KQENKRNMKEKGILPRESFDYKNVDFSSFQGGSRAHNQIPFQAQNKKKNARGNRGKGNRG
NKKQKWNC
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgacacgagtattgagcctggtcacaaatctcgtaatgattccgaaccacag
gatgaatccgcaaatgctcagggtgtggaggtcatcgaaatcctaccaggattcacaaat
tttgatgatttcgttaatgttggatttgaagcactaaaaaccggcataaaggccgctaac
ggcttacccagtggtgaaaaatatgactactacaaatgttttccaacctttcgtaatatc
attaatgaggagatcaacaacgttttggtctgtatgcaaaacattacagaaggtgtggga
gtgagaggcaatatcagacggcgtgacatagaagagaagtttgagcttttgattgaagct
aatgatattttattagagcgagcaggaatatgcatggatgaggcctcaggaattctgcga
aacccagatgtcgaatttgttgtatcgcaaagcaactcgacagctgtaagcggcagctgg
aacaatctgtccttccattcaaaaactcagcaaactcaaccggcaaataaggctcaagcg
atttgtttactgacggcaaagaatatccagcgaccgcagttgaagtttgatgataaaatt
gataacagcattaaaccttggcaacctagaataaaggataaaccaaactcgttgaagcca
ctcgctctgtatgtcgaagaagatgaagatggagaatttttcagccatccatacgaattt
gaacttgataggtttgaagcacctgagcatcaactggagtctcgtgttcctgttgaatat
aaacatatagacgacacttctttaatcgtgattgaaaaacctgaagatataaaaatacta
ttggatgatttgagtaaatacactgagattgcagttgacttggagcatcattcttataga
tcattccaaggcataacatgtctaatgcaaatatcaaccaaagatacggactatcttgtc
gacacattatcacttagatctgagctgcaccagctcaatgagatatttacgaaaccgtcc
attcttaaggtatttcacggcgctggcagtgacatcgagtggctgcaaagagatttgtct
ttgtacattgtaaatatgtttgatactcatattgcggccaaacagcttaatttcccatac
ctaagtttggcacatcttatgaagcggtactgtgatattgatccgaacaaacatttccaa
ctggccgattggcgagtcaggcctctacctgaggagctgatgaaatatgcaagggaagat
actcactacttgttgtatattaaagataatcttatgaatgcattgctggaacaggccaat
ggccaaagcaatatcttgaaggcagtgtatgatcgaagtacagacgtatgcaaaaagata
tacagaaaaccagtctggtcggaggaaaagtgtatgaatctgtatcgaaagagcaagaaa
atgttcaacaataggcaattgtacgctcttagagaactgcataagtggcgcgatgctact
ggcagggcagaggacgacagtactggttacgttctaccaaatcacatgctgttgaatatc
gctgagagtttaccccgtgaaatgcagggaattctggcatgttgtaaccccataccccct
ctggtcagacaaaacgcattatcgcttcataaaataatcttgaaagcaaaggaacaacca
atggtcaaacctatcctagaagatgatatccgacaacgtatgacgcagcgaaatcaagtt
acagatttagaaactacacttctatattcacctcatgatatgccacatgatatggagatc
agagccgatttaccttgtttgttggacctaaacagctcttcagaaattaatgttaccgaa
caaacgattcctcatactgtcactgtatttgacagccccccacaatcggaggatgaaaac
actacggggcacattacgagaaaaaaaagacgaacgccattcatcagtccttttgaacgg
tataagcgtgtagtacccatggtagctgcagaagaggcgaaagaaagagagagacaagaa
aaagaagaagctgaaagaataaaattggtagaaaatagtggaaacgaaatagcagagagt
aaaaacagagtttataaacacttcaaagatgtggttggagcagttactaatccagtcagc
gtacagcaatccgctggtagcagttcgaatcagtctattgattctaaacagtttgggcct
gaccacaaaactttgagccagatgcagggaagaaaacgtaaacgacaatctaattatcat
gatgatactaaactgacagagtcgcaagatgatttatcgacaccgctacctttcctgcat
aaaaaattcactcaaaattatagacgagataaacgagagttgaattcacccacacagggt
gtaaagaaacaaaagaaatcataccacgatacagggcacagttctttcactgaagatacg
gaactttctgcaaataatgcattgtctgtcaaatcactcagaaacaataagaagaagagt
aaacaggaaaataagagaaatatgaaagagaaaggtattctacctagagaatcatttgat
tacaaaaatgtcgatttcagtagttttcaaggaggcagccgcgcgcacaatcagattcct
ttccaagctcagaacaagaaaaagaatgcacgaggaaatcgagggaaaggaaatagaggt
aataagaagcaaaaatggaactgctaa
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