Neodiprion virginianus: 124302486
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Entry
124302486 CDS
T09046
Name
(RefSeq) cleavage and polyadenylation specificity factor 73
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
nvg
Neodiprion virginianus
Pathway
nvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124302486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvg03021
]
124302486
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124302486
Transcription machinery [BR:
nvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124302486
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124302486
U7-dependent histone pre-mRNA processing factors
124302486
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Gp58
Motif
Other DBs
NCBI-GeneID:
124302486
NCBI-ProteinID:
XP_046614674
LinkDB
All DBs
Position
1:5048203..5050803
Genome browser
AA seq
686 aa
AA seq
DB search
MSSKRKPDTQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL
PFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV
SNIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRG
GRCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKI
RRQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDSKNGVI
IAGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPH
VVLVHGEQNEMGRLKAALQREYEDDPHTIMEIHNPRNTVAVELYFRGEKTAKVMGTLAME
TPKPGQKLSGVLVKRNFNYHVLAPCDLSKYTDMSMSQVVQRQSVHFSTSLPVLKHLLTQI
AGSIENIDDKKMRVFKNVDVIVEGKVVTMEWIATPVNDMYADSVLTAILQAEMMEQPPKT
LPAPTKMDRMHFKECLIEMLQEMFGEDSVPKIFKGEKLYVTVDGKKAHIDLLNLEVTSTE
DETFQQIVQTAVSKLHQSLAPPCDTL
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctaaacggaagccggacacccaagtaccggcagaagaaagcgatttactttcg
attcggccgcttggtgccggacaagaagttggaagatcttgcattatgctggaattcaaa
ggaaaaaagataatgctggactgtggaatacatccaggtctctccggcatggatgctctt
ccattcgttgacttggtagaagccgatgaaatcgacctgcttctgatatctcattttcac
ctcgatcactgtggagccttaccttggtttttgcaaaaaactagttttaagggacgttgt
ttcatgactcacgcgacaaaagctatatatcgctggttattgtccgattacatcaaagtc
agtaacattgccacggagcaaatgttgtataccgagtctgacctagaaactagtatggat
aaaatagagacgataaatttccacgaggaaaaagatgtcttcggtattaaattttgggca
tataatgctggtcacgttcttggcgctgctatgttcatgatcgaaattgctggtgttaaa
atactgtacacaggtgattttagtcggcaagaagataggcatttgatggctgccgaaata
ccaaacattcatcctgacgttttgataactgaatccacctacggaactcacattcatgag
aagcgggaagatcgagaaggaagatttactaatttggtacacgaaattgtgaacagaggc
ggaagatgcttgattcctgtatttgccctgggacgagcacaagagctactgctaatcctg
gatgaatactggagccaacaccccgagttgcatgaaattcccatttattatgcttcgtct
ttggccaaaaaatgtatggcagtttatcaaacttacgttaacgcgatgaacgacaaaata
cggagacagatagcaattaacaacccttttgtattcaagcacatttcaaacttgaaaggg
atcgatcatttcgaagacataggaccttgtgttgttatggcatctcctggtatgatgcag
agtggcttgtccagagaattatttgagtcttggtgcactgattcgaagaatggagtaata
atcgccggttactgcgtagagggtactctggccaaaacaatcctctccgaacccgaagaa
attacaaccatgtctggtcaaaaattgcctttgaaaatgtcagtggattacatatcattc
tcagcccataccgactatcaacagacgtcagagtttattaggattttgaaaccaccacat
gttgtattggttcatggggaacaaaatgaaatgggcaggttaaaagctgctctacaaagg
gaatacgaggacgatccacacaccataatggagatacacaatcctaggaatacagtggca
gtagagctgtattttcgtggtgaaaaaacagcaaaagttatgggaactttagctatggaa
actccaaaacctggacagaagttatcaggtgttctggtgaaaagaaacttcaattaccac
gtactggcgccttgcgatttatcgaagtataccgatatgagcatgagccaggtggttcaa
agacaaagcgtacatttttctacatcgttaccggtattgaaacatttgctaacgcagatt
gctggaagcatagaaaatatcgatgataaaaagatgagagtattcaaaaatgttgatgtt
attgtagaaggaaaagttgtcacaatggaatggatagcgactcctgtaaacgacatgtat
gcagattcagttttgactgcaatattgcaagctgaaatgatggaacaaccgccgaaaaca
ctccctgcaccaacgaaaatggaccgaatgcatttcaaggagtgtctgatagaaatgctt
caagaaatgtttggtgaagattcggtacccaaaattttcaaaggcgaaaaactgtatgtt
acagttgatggtaaaaaggctcacatagatttgttaaatttagaagtaacaagcacggag
gatgaaacctttcaacaaatagtccagactgccgtttccaagttacatcagtcattggct
ccgccatgcgatactttataa
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