Neodiprion virginianus: 124302954
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Entry
124302954 CDS
T09046
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
nvg
Neodiprion virginianus
Pathway
nvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124302954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nvg03400
]
124302954
DNA repair and recombination proteins [BR:
nvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124302954
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
nSTAND_NTPase5
ARM_CUL7_CUL9
AAA_22
Motif
Other DBs
NCBI-GeneID:
124302954
NCBI-ProteinID:
XP_046615516
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All DBs
Position
4:33746390..33753650
Genome browser
AA seq
1144 aa
AA seq
DB search
MPKVNTLFNYFTSPKTDKRLVKETSSPQRESPKSNGDQKGRGARGLKAGKENSNKENKRR
TPTSRHQIKSSSVATRKRSSNKETEEDETSRPKRRRLIIPSDNSDDSGDDYKPTEDDASS
SEFSASEADSESEALSSGVESDEETPKKKRNIEPKSAAPKKNSRGKTQVKSELKNSDPPS
QTTGNSSVNTQGWSHLKYDFLQTNKIKDIHQRPPSDPNYDPRTLYVPHYFKINQTPAMKQ
WWEMKCKNFDCVIFFKVGKFYELYHMDAVTGVNELGLSYMRGEFAHSGFPEIAYSRFASS
LIEKGYKVARVEQTENPEMMSARVSKMSQVTKFDKVVKREICQISSKGTRVFTAQDSETS
TASSTYLLSIVEKFNPSTPTSIYGVCFIDTSIGGFHLGQFEDDRHSSRLLTLVSHFPPSQ
VIYERGGISERTNKILNTMLATALKEPLQRETQFWSAATTLKKLHEGEYFKSEFNSDFTW
PEGLKPYLSDGDSLGLTAADNMELAISALGGCVFHLKECFIDQQLLAQGRFESWIPPDHE
DRQSSGKFANNMVLDAITINNLRILGGPGSLISMLDHCCTPFGKRLLREWICRPSCRKSE
IMQRQQAVTELIDKIEIMQNVRGSLAPLPDLERLLSKIHAQGNFAKGQSHPDARAIMYES
KTYSKRRILDFTNALHGFEEASKIIDSIGDVKCDLLKRCIKHHPEGDFPELEEMLNYFKS
AFNQEEAKKEGCIIPKPGVDSEYDAVLEEVSEIKRDLEKYLEQQRKHFGVKVNYFGTEKK
RFQIEVPDSQLRKVTTDYELQSQRKGFRRYYTAEAKELLERQIAAETNKDKVLKDISRRI
FAKFSEKYDVWCSAVYQLATLDVLTAFAEYSQSAEMSVPVIEDLMSEKSAFIDIRDGRHP
CVTSDDFIPNDTLLGTEDSASLVILTGPNMGGKSTVMRQVGLLTIMAQIGCHIPASSCRL
TLVDRIFTRLGANDDILTGQSTFFVELSETATILQHATPNSLVLVDELGRGTSTYDGTAI
AASVVGALKERKCRTLFSTHYHALVEDYKLDKNVSLSHMACMVETEEEEEVSQETVTFLY
KLSKGACPKSYGFNAARLAGISSKITLKAHEIASKLENEVNQRHFLVALFKGKSDLKTLL
AALK
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggttaatacgctattcaattactttacgtcacccaaaacggacaagcgactc
gtcaaagaaacgtcgagtccccaacgagaatctcccaaatcgaatggcgatcaaaaagga
agaggtgcgcgtggtctaaaagcaggtaaagaaaattcaaataaagaaaacaaaagaaga
actccgactagcaggcaccaaatcaaatcctcaagtgtggcaaccagaaaaagatcttca
aacaaggagacagaagaagatgagaccagccggccaaagagaagacgattgataatacca
tctgacaacagtgatgattcaggagacgactacaaacctactgaagacgatgctagttct
tccgaattttctgcctcagaagctgatagtgagtctgaagctttatcttctggcgttgaa
agtgatgaagaaactcccaagaaaaaaaggaatattgaaccaaaaagcgctgcgccgaaa
aaaaacagtcgtggaaaaacccaggtgaaatctgaactgaaaaattctgatccccccagt
cagacaactggtaacagttcagttaatacacaaggttggagtcatttgaaatacgacttc
cttcagacgaataaaatcaaagatatacaccaaaggcctccaagcgatccaaactatgat
ccaagaactctttacgtgccacattatttcaaaatcaatcagactcctgctatgaaacag
tggtgggaaatgaaatgtaagaattttgactgtgtaatcttttttaaagttgggaaattt
tatgagttgtatcatatggatgcagttactggtgttaacgaacttggcctatcatatatg
cgtggggaatttgcacattctggctttccagaaatagcatatagtcgatttgcatcaagc
ttgatagagaagggatacaaagtagctagagttgaacaaaccgagaatccagagatgatg
tcagccagagtcagtaagatgtctcaagttacgaagtttgacaaagttgtgaaaagagag
atatgtcaaattagcagtaaaggtacgagagtattcactgcacaggatagcgaaacctct
actgcaagttcaacttacttgctctcaatagtagaaaaatttaatccatcaacacccacg
tcaatttatggtgtctgctttatcgatacttcaattggtggttttcatcttggacaattt
gaagatgatcgtcatagttcgaggctgttgacgctagtttcccattttcctccgtcacag
gttatttatgaacgtggtggtatatcagagagaacgaataaaatattgaataccatgctg
gctactgcactcaaggagccactgcaacgggagacgcaattttggtctgctgctactacc
ctcaaaaaactacacgaaggagaatatttcaaatcagagtttaattctgattttacctgg
ccagaaggtttgaagccatatttaagtgatggagacagtttaggactcactgctgctgat
aatatggagctagccatatctgcattggggggatgtgtatttcatctaaaagaatgtttc
atagatcagcaattacttgcccaaggacgtttcgaatcttggatccctcctgatcatgag
gatcggcaaagttcaggaaaatttgccaacaatatggtactggatgccattacaataaat
aatctgagaatccttggagggcctggttcgctcatatcaatgttggatcattgctgcacc
ccgtttggtaaacgattgttacgcgaatggatttgccgaccatcttgccgcaaatctgaa
ataatgcaacggcagcaagcagttaccgagctaattgataaaattgaaattatgcaaaat
gttcgcggctcattagctcccctcccagaccttgagagattactgagcaaaatacatgct
caaggtaattttgcaaagggacaaagtcatccggatgcaagagctatcatgtatgaaagt
aaaacgtattctaaacgaagaatcctggactttacaaacgcgcttcatggatttgaggaa
gcttcaaaaattatagattcaatcggtgacgtaaaatgcgatctactaaaacggtgcatt
aagcaccatcctgagggtgactttcctgaattggaagagatgctaaattacttcaagagt
gcttttaatcaagaagaagcaaagaaagaaggatgtattatacctaaacctggagtcgac
tcagagtatgatgcagtactcgaagaagtgtctgaaataaaacgagatctagaaaaatac
ttggaacaacagagaaaacatttcggagtaaaggtgaattacttcggtactgagaaaaaa
cgttttcaaattgaagttcccgattcccaattgaggaaagttaccacagattatgaactt
cagtcacagcgcaaaggtttcagacgctattacactgctgaagccaaagagcttttggaa
agacagattgccgcagaaactaacaaagacaaagtgctaaaagatataagcagaaggata
tttgctaaatttagcgaaaaatacgatgtatggtgttcggctgtctaccaattggctaca
ctagacgtcctcactgcatttgctgaatattcccaaagcgccgagatgtctgtccctgta
atagaagatcttatgagtgaaaaaagcgcttttattgacataagagatgggaggcatccg
tgtgttacatctgacgactttataccaaatgacactttattgggaacagaagattccgcg
tcacttgtcattctaactgggcctaatatgggaggaaagtcaactgtaatgcgtcaagtt
ggtctccttacaatcatggcccaaattggttgtcatattcccgcaagttcatgccgattg
acattagtcgatcgtattttcactcgtttgggtgccaatgatgatatattaactgggcaa
agtactttctttgtggagttgagcgaaactgcaactatacttcagcacgcaacaccaaac
tcactggttctggtggatgaattaggacgaggcacctcaacttacgacggaacagcaatt
gcagcttcggttgtcggcgctctgaaggaacggaagtgtcgcaccctattttcaactcac
tatcatgccttggtagaagactataaattggacaagaacgttagcttgagccacatggcg
tgtatggtagaaactgaggaggaagaagaggtttcacaggaaacagtaacgtttttgtac
aaactgagcaaaggtgcatgtccaaagtcttacggtttcaatgcagctcgtttggctgga
atttcatcaaaaatcactctaaaagctcatgagatagccagcaagttggaaaatgaagtt
aaccagaggcacttccttgttgctctatttaagggcaaaagtgacctaaaaacccttctt
gcagctttaaagtaa
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