Neodiprion virginianus: 124303551
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Entry
124303551 CDS
T09046
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
nvg
Neodiprion virginianus
Pathway
nvg03440
Homologous recombination
nvg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124303551
03460 Fanconi anemia pathway
124303551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nvg03032
]
124303551
03400 DNA repair and recombination proteins [BR:
nvg03400
]
124303551
Enzymes [BR:
nvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
124303551
DNA replication proteins [BR:
nvg03032
]
Eukaryotic type
DNA Topoisomerases
124303551
DNA repair and recombination proteins [BR:
nvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
124303551
FA (Fanconi anemia) pathway
124303551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Lar_restr_allev
Zn_ribbon_GRF_2
Zn_Ribbon_TF
Motif
Other DBs
NCBI-GeneID:
124303551
NCBI-ProteinID:
XP_046616836
LinkDB
All DBs
Position
4:2502524..2507346
Genome browser
AA seq
1048 aa
AA seq
DB search
MKFTSKITKIKVKKYSFIDLRTTWIQLAKFSSSDTVKELYNSGKNVMKVLNVAEKNDAAK
GIAGYLSRGSSHRREGLSVYNKIYEFDTQLWGQQCKMIMTSVSGHLLNHEFVGGYRNWQG
CNPLSLFEAPVVKQCEENFMKIKKTLEREAKGCQALIIWTDCDREGENIGFEVIQVCQAV
KPTIKIYRAKFSEITAPSVTRALHNLGVPNKAISDAVDVRSELDLRIGAAFTRFQTMRLQ
KVFPQTLAEMLISYGSCQFPTLGFVVERFLAIENFKSEPFWKIKVTDERDGILVEFRWDR
NRLFERLPCQIFLDMCLESPTATVEKVTCKQKSKWRPLPLDTVELAKLGSRKLKLNAKET
MKIAEKLYTQGIISYPRTETNIFPKELNLVPLVEHQSASPQWGPFAQQILQHGPFPRQGK
KNDGAHPPIHPTKYIATLGGNEARVYEFIVRHFLASISKDAEGQETIVHIDIAQEKFIAS
GLHIIAKNYLEVYPYETWNAKEIHAYEEGQTFRPTGIEMVDGETSPPNLLTEADLIALMD
KHGIGTDATHAEHIEKIKSRQYVGLKDQKYFIPGKLGIGLVMGYDSMGFHMSKPHLRAGL
ENDLKLICDGVKQPADVLQDQISRYKTVFTATLRQAGLIDEALAHYLDEQPAQVQHAEIA
NPDPDIIVYKCPKCGSNMLLKDRRNTPGKYIGCMAFPTCNNSIWFPTTVENIEVLNNKCN
RCPGNMPLLKFTLRQGTLPHLGTSYTSCIGGCDTVLNETFDIRTHSVQNVPQAGNGGAPQ
TNSNQNPRTNQTRQNAQRQPNGQINNSRANDTSRTDSGVSTWSSAPSMTSVRHNKFSNRS
SNQNQQNMETDDTILCNCHERAIELTVRKEGTNKGRQFYKCAKPQENSCDFFLWAAENAL
PNDNANRNHSQPSRNTNSSYSNQTQQSQTNMRFDREAGGSSSSQGITCTCGQPARKLTVH
KEGPNKGREFYGCPQGIGTTCKFFKWADENDDDGSCDNGQRTHTGGFRGGRNTQNANLPR
ARNPSKRKCGLCGQEGHTRRTCSQNDAG
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacatcgaaaattacgaaaataaaggttaagaaatattcgtttatagattta
agaactacatggattcaactggccaaatttagtagcagtgatactgtgaaagagctgtac
aatagcggtaaaaacgtcatgaaggtgttgaatgttgctgaaaaaaatgatgcagctaaa
ggtatagctggctatctttcacgtgggtcttcgcatcggcgagaaggactgtcagtatat
aacaagatctacgaatttgatacccagctatggggccagcagtgcaaaatgataatgacg
tcggtatctggtcacctgttgaatcatgaatttgtcggaggatatcgtaattggcaggga
tgtaatccactatctctatttgaagcacctgtggttaagcagtgcgaggagaattttatg
aaaataaaaaaaaccttagagagggaggctaagggttgccaggcactgattatatggaca
gattgcgatcgagagggtgaaaacataggctttgaagttatacaagtttgccaagctgtg
aagcccaccattaagatataccgagcaaaattttcggaaataactgctccatcggtgact
cgagcacttcataatttaggagtaccgaacaaggccataagcgatgctgtcgacgttagg
agcgaattggacttgagaataggagctgcatttacacgatttcaaacaatgagacttcaa
aaggtttttccacaaacgctagctgagatgttgatcagctatggcagctgccagtttcca
accctgggttttgtagtagagaggttcctcgcaattgaaaatttcaagtcagagccattt
tggaaaatcaaagtcacggacgaacgtgatggaatattggtggaatttagatgggacaga
aatcgtttgtttgaacgccttccgtgccagatatttctggacatgtgtttagaatctcct
actgcaactgtagaaaaagttacgtgcaaacagaaaagcaaatggagaccgctgccattg
gacaccgtcgaattagccaaattgggttcacgcaagttgaaactaaacgcaaaggagaca
atgaaaatagcagagaaactgtacactcaaggtattatcagctaccctcgtacagaaact
aacatttttcccaaggaactcaatcttgtgccactagtcgaacatcaatctgcaagtcca
cagtggggaccgtttgcacaacaaatactgcaacacgggcctttcccacgtcaagggaaa
aaaaatgatggagctcaccctccgattcatcctacgaagtacattgctactttaggaggc
aatgaggctcgtgtatacgagtttatagttcgtcattttttggcctctatatcaaaggat
gccgaaggtcaagagaccattgttcacattgatattgcgcaggaaaaatttatagcaagt
ggtcttcatataattgccaaaaattacttagaagtgtacccgtacgaaacgtggaatgca
aaagaaatccatgcgtacgaagagggacaaactttcagacccactggcattgaaatggtt
gatggggaaacttcacctccaaacttgctaacagaagctgacctaattgctttaatggat
aagcacggaattggcactgatgcaactcacgctgaacatatcgagaaaataaaatcaagg
caatacgtgggcctgaaggatcaaaagtatttcattcccggaaaactcgggattggattg
gtcatgggctacgacagtatgggctttcatatgtccaaaccacacctcagagcaggactc
gaaaacgatttaaagctaatatgcgacggtgtgaaacagccagcggatgttttgcaggat
caaatatccaggtataaaacagtattcacagcaacgttacggcaggctggattaatagac
gaagcgcttgcacactatcttgacgagcaaccagcgcaggtgcagcatgctgaaatagca
aacccggatccagatataattgtatacaagtgtccaaagtgcgggagtaatatgttatta
aaggatcgaaggaacactcctggcaaatatattggctgcatggcgtttccgacatgtaat
aattcgatatggtttccaaccactgttgagaatatagaagttttgaataacaagtgtaac
aggtgtccaggtaatatgccattacttaagtttaccttgcgccaaggcaccctgccgcat
cttggaacctcttacacctcttgtataggaggatgtgatacagtgctcaatgagactttt
gatattcgaacacatagcgtacaaaatgtaccacaagctggtaatggtggagcaccgcaa
acaaactcaaatcaaaatcctagaacaaatcaaacacggcaaaacgcacaaaggcaacct
aatggccagataaataattctagagcaaatgacacaagccgtactgattctggggtgtct
acttggagctctgcaccttcgatgacttctgtacgacataataagttttctaatcggtct
agtaatcagaatcaacagaatatggagactgatgacacgattctctgtaactgtcatgaa
agagcaatagagcttactgtacgtaaagaggggacaaataaaggaagacaattctacaaa
tgtgccaaaccgcaagaaaacagctgtgacttctttctctgggctgcagaaaatgctcta
cccaatgataatgcaaacagaaatcattcgcaaccatctcggaataccaatagcagctat
agtaatcaaacacagcagagccaaactaatatgaggttcgatagagaagctggcggatca
tcgtcatctcaaggcattacctgcacgtgtgggcaaccggcaagaaaacttaccgtacac
aaggaaggtcctaacaaaggaagagaattttatggatgccctcaaggaataggcactaca
tgtaaattttttaaatgggctgatgaaaatgacgatgatggttcatgcgataatggacag
agaacacacacagggggctttcgaggaggtagaaatacacaaaatgcaaatcttcctaga
gcaagaaatccaagtaaaaggaagtgcggtctttgcggacaagaaggtcataccagacgt
acctgttcacaaaatgatgcaggttaa
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