KEGG   Neodiprion virginianus: 124303937
Entry
124303937         CDS       T09046                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
nvg  Neodiprion virginianus
Pathway
nvg03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:nvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    124303937
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nvg03021]
    124303937
   03036 Chromosome and associated proteins [BR:nvg03036]
    124303937
Transcription machinery [BR:nvg03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     124303937
   Coactivators
    SAGA/TFTC/STAGA complex
     124303937
Chromosome and associated proteins [BR:nvg03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     124303937
    STAGA complex
     124303937
    TFTC complex
     124303937
    SAGA complex
     124303937
    SLIK complex
     124303937
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_Nup120_160 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_SPT8 WD40_like Beta-prop_EIPR1 Ge1_WD40 RMC1_N Beta-prop_DCAF12 Beta-prop_DCAF4 Cytochrom_D1 Beta-prop_WDR35_TULP_N Mala_s_1-like Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 124303937
NCBI-ProteinID: XP_046617757
LinkDB
Position
4:8648781..8661188
AA seq 588 aa
MKRSKIDIINATVESYLKRRHYHQESDIFRKSERGDCQTSAAEMTLSTTVECSTSRENSI
VFSAITNDAGVADQAYHKLKIWIQTINNENLKIELQGVLYPIFCHLYLEMLHGGNRQTAI
QFLKMYQNDFVSDTERDFLEELSSVFSIQDIELRPLVNAFRTRKYKVDMSDDAHFCLQKF
LAKQGHVILMQVINTHVTIIRKIPEVHPDEDRSCERGPNRESVINGHVEQPSGTGVDREM
RELQEAIRLIRSNVHQPLRVYTINNANENASCGSITPNIDRLAAGFSTSEIRLWGISDTV
LTRPRLKAAPLNFASNNPSTSRSLWTEDHMDEAGAIVMRGHTDVVHDLKFIPEADVLLSV
SSDKDMRAWRLSDYSCAAIYNGHNYPVWCMDTSVFNLYIATGSHDRTAKLWSLDRTFPLR
IFAGHFLDVNCIRFHPNARYLATGSADKTIRLWSKDDGSLVRVYVGARSTIYSLAFSPDG
KYLAAAGDDKSVSIWDLATNTQLIELKGHQDTVMNLDWSSDGQYIASASIDGVVRLWSTQ
RHINTSNGDNTNSQSGQDNSQVYPTNCSSILSLQYYHKNDSLVCIGTS
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgaaacggtcgaaaattgacataatcaacgcgactgtcgaatcctacttaaaacggagg
cactatcatcaggagagtgacatttttcgtaaatctgaacgcggagattgtcaaaccagc
gccgccgaaatgactttaagcacgactgtcgagtgcagtacttctcgtgagaattcaatc
gtctttagcgctattacaaacgacgctggagtcgctgatcaagcatatcacaaattgaaa
atatggatccaaacaataaacaatgaaaacttgaagattgaactgcaaggagtattatat
ccgatattctgtcatttatatctggagatgttgcatggcggtaacagacagacagctatt
cagtttttaaaaatgtaccaaaatgactttgtctctgatactgaacgagactttttagaa
gaactatctagcgtattttctattcaagatatagaactcaggccattggttaatgcgttc
agaacaagaaaatataaggtcgatatgtcagacgatgctcacttttgtcttcaaaagttt
ctcgccaaacagggacatgttattttaatgcaggtaataaatacacatgtgacaatcatc
agaaaaataccagaagtacatccagatgaagatagaagttgtgaacgtggaccgaataga
gaatcggtgattaacggtcatgtagagcaaccttcgggcacaggtgtagatcgtgaaatg
cgtgaactccaagaagctattcgattgattcgtagtaacgttcatcaaccattgagggtc
tatacaattaataatgccaatgaaaacgctagctgcggttcaattacgccgaacatagac
aggctagcagccggatttagcacttctgaaataagactgtggggcatctcagatacggta
cttacaaggccaagacttaaagcagcgccgcttaattttgcatctaacaatccatccacc
agtagaagtttatggaccgaggaccatatggatgaagcaggggcaattgtgatgcgaggg
catacagacgtggtgcatgatttaaaattcattcccgaagctgatgttcttctatctgta
tctagtgacaaagatatgagagcatggcgactgagcgattattcctgtgcagctatatac
aacgggcataattatcctgtatggtgcatggataccagtgtatttaatttgtacatagca
actggttcgcacgatcgtactgccaaactttggtcgctagatcgaacttttccacttcgg
atatttgcgggtcactttctagatgttaattgcattagatttcatcccaatgcccgatat
ttagcaaccggttcagcagataaaacgataaggctatggagcaaagatgatggtagtttg
gttagagtttatgtcggcgctcgttcaacaatttacagtcttgcttttagtccagatgga
aagtatttagccgctgctggtgacgacaaaagtgtatctatatgggatttagcaacgaat
acccagttgattgagttaaagggtcaccaggatacagtaatgaatttggattggagttct
gatggccagtatattgctagtgccagtatagatggagtagtgcgactttggtccacccaa
cgacacataaatactagtaatggggacaacacaaactcacaatctggacaagacaattct
caagtatatccaacaaattgctcaagtattctatcgctacaatactaccacaagaatgac
tcacttgtttgtattggaacatcgtag

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