Neodiprion virginianus: 124304117
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Entry
124304117 CDS
T09046
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
nvg
Neodiprion virginianus
Pathway
nvg03008
Ribosome biogenesis in eukaryotes
nvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124304117
09123 Folding, sorting and degradation
03018 RNA degradation
124304117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124304117
03009 Ribosome biogenesis [BR:
nvg03009
]
124304117
03016 Transfer RNA biogenesis [BR:
nvg03016
]
124304117
03036 Chromosome and associated proteins [BR:
nvg03036
]
124304117
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124304117
mRNA degradation factors
5'-3' decay
5' exonucleases
124304117
Ribosome biogenesis [BR:
nvg03009
]
Eukaryotic type
Pre-60S particles
RNases
124304117
Transfer RNA biogenesis [BR:
nvg03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
124304117
Chromosome and associated proteins [BR:
nvg03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124304117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
dsrm
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
124304117
NCBI-ProteinID:
XP_046618114
EnsemblRapid:
ENSNVRG00000016011
LinkDB
All DBs
Position
4:41521475..41539408
Genome browser
AA seq
1681 aa
AA seq
DB search
MGVPKFFRYMSERYPCLSEVVREYQIPEYDNLYLDMNGIIHICSHPNDLDPHFRISEEKI
FRDIFHYIEILFHMIQPQKLFFMAVDGVAPRAKMNQQRGRRFRSAKEAEVLEAKAKEKGE
VLPKEARFDSNCITPGTVFMTRLNEQLKYFVTYKITTDKLWQKCKVILSGHETPGEGEHK
IMDYIRYIKSQSNYDSNTRHCLYGLDADLIMLGLCTHEPHFSLLREEIKFGNKQKRVSTP
EETTFFLLHLSVMREYIEHEFSSLKDKLSFDYDIEKIIDDWVLMGFLVGNDFIPNLPNLH
IANGALPILYLAYMEVLPTLDGYINEGGTLKLDRFEKLMERLSRVDIEQFAEHYADLKYF
ESKTGRRPNETERHTSHNSEDASEASAKNPGNKDLEDLIKSTYNMFSGHSDEEEPLDMDD
DSDNEVYNMEFIQHKRDYYMNKLEYENVDADVLKSQAECYVRAIQWNLNYYYNGCCSWSW
YYPHHYAPYISDIKGFKDLKLEFDMGRPFLPFQQLLAVLPAASRSLLPKPFESLMIGEQS
PIIDYYPAEFKTDLNGKRQEWEAVVLIPFIEETSLLEAMEPCYAKLTPDEKQRNSHGPMY
VYYHTTEDLGLYEAPQYFPKLSTNHAKLKLINREDIIVPREKLVKGLCPGIRLDVYFPGF
PTLKHINHTAELRKAKVKVFEQVSRGENMILQIVPSDARNLADLAGQILGTSIFVSWPHL
VEARVVAISNREVKYTLSADRNETIVKEEMRGPLSVQWNQSKRAISENYMNRLGIDVGET
DVLVHACLMTGRRYIFGTQGKLSLEKQWSDVPSAFALQATVGDIAVHDSSFVQYKNIGEV
FTPKSICFMLGHPHYGAMGEVSEGGTSTKTGRVKLAMWITEEPNLDLLKQSQSDAKSRYM
HGSIAAQRLGINSHLLSRITGSIYVMQGPREQLENPKRNLGLNLKFNKKNQEVPGYTKKV
NGQWLYSTKAIDLIRAYMRKFPLLFEKLASNVTNDIYYEDELFTEPECMTVSAVSSWLKE
QPFYNIESCSCGTESLDFEDIEEIERVVDAFIESQKNSPTGKTVMMQVKPHLLFKPSLHM
GNFPPDATAQHKIYDRVVSVRESFTVPLGYRGTIFAIQRTEKISDLMYDIVFDKEFVGGL
SLNMCSANRGYRLAPSDFINLSHGFRAENVKSGKSNVDTSEPSSWRSPSNSRNHTSRSNT
SAFALFNSQGGLAPAFVKGEMQFPVSPMKIMKKNSDQTQLNHKITAETNVQDNVNAQSKA
RGAVSQEQSNSKVENETAQIVQDGKGQSLQRSSEFQALWNELHRLQKSSGSNSQQKLPMT
PNTESKETPSTVTNSPREAHLWPQDPSAFLKAMLKISDDNSKNNTASSNKPPAFPQLSKS
SDAPPLVQQLFDHARQVENTKKSNTVSYCSQLLTYFQLKGMGMPRYSYSPNKETNFVCAR
IFLPNGRTFGGEFCQSRELAAESAAKRAYTELDLNNIPDPGVNILPTPPQQWYNTRHRAI
HPQNIRPIINGPPPMPPMMVPNPFMSVFNGSSNVPQSPNNSSLLPTFSQTRPQQRPHPGT
GNSSKNWRTENNKSEQRKTAAFVPLQAQKQHRSANPRNITGTANLIDNLHRKQQERKETE
TNEETTSKVTGSKTTDTPRPQNIQNGLQNPLKHQQKSAKQRRSRIAANFGSVSVANGAGS
K
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgccaaaattcttcaggtatatgagcgaaagatatccatgcctcagcgaggtt
gtcagggaatatcagatacctgaatatgacaacttatacttggatatgaatggcattatt
cacatatgttctcatccgaatgacttggatccccactttcgtatatcggaagaaaaaata
tttcgggacatatttcattatattgaaatattgtttcacatgattcaaccacaaaagcta
ttttttatggcggtcgacggtgtagcaccacgtgctaagatgaatcaacaaaggggccgc
agatttcgctcggctaaagaagctgaggttttagaagccaaagcgaaggaaaagggcgaa
gtacttccgaaggaggcacgatttgactccaactgtataacaccaggaactgtattcatg
acacgtcttaatgagcaactcaaatattttgtcacctacaaaataacaacggacaaactt
tggcagaagtgcaaagtgatactgagcggacatgagacaccaggtgaaggagagcacaaa
atcatggattacattagatatattaaatctcaatcgaattatgacagtaacacaaggcac
tgcttgtacggtttggatgctgatctcataatgctgggtctgtgcacgcatgaacctcat
ttctccttgctgagggaagaaataaagtttggaaataaacagaagcgagtgtccacccct
gaggaaaccacattttttcttcttcatttgtcagtaatgcgagaatatatcgaacacgag
ttctcttcacttaaggataaactttcatttgactatgacattgagaaaattatcgatgac
tgggtactaatgggtttcctggttggaaacgattttattccaaatttgccaaatttacat
atcgctaacggtgccctgccaattttatacttggcttacatggaagtgctgcctaccctg
gacgggtacataaacgagggcggtactttgaagttggatcgctttgaaaaattaatggaa
cgtctaagtcgggtggatattgaacaatttgcagagcattatgctgatttaaaatatttc
gaatccaagaccggtcgaaggccaaatgaaacggaaaggcatacttctcacaattctgaa
gatgcgtcagaagcctcagcaaaaaatccgggaaataaagatttggaagatttaattaaa
tctacctacaatatgttttcgggccattctgatgaagaagaaccattagacatggatgac
gattcggataacgaggtttataacatggaatttattcaacacaagcgtgactattatatg
aacaagttggaatatgaaaatgtcgatgcagatgtattgaaatcgcaagcggaatgttac
gtcagagcgattcagtggaatctgaattattattacaacgggtgttgcagttggtcgtgg
tattatccgcatcactacgcgccatatatttccgatataaagggttttaaagacttgaaa
ttggaatttgacatgggccgaccatttttaccttttcaacagctattggcagtattgcca
gcggccagtagatcattactgccaaaaccctttgaatcgttaatgattggcgaacagtca
ccgatcatagattactatccagctgaattcaaaactgacttgaatgggaaacggcaagag
tgggaggctgtcgtccttattccattcatcgaagaaacaagtttattggaagcaatggag
ccgtgttacgctaagttaacacctgatgagaaacaacgaaattcccatgggccgatgtac
gtttattaccataccacagaagatttgggtttatacgaagctcctcagtattttcctaaa
ttatctacaaatcacgcaaagcttaaactaatcaatcgggaagacattattgtaccgaga
gaaaaactagtaaagggattatgtccaggcataagactggatgtttacttcccaggattt
ccaacgttgaagcacattaatcacacagctgaattacgcaaagccaaggtgaaagttttc
gaacaagtgtcacgaggtgaaaatatgatactacaaatcgtgccatccgatgcacgaaac
ttggctgacctggccggccaaatactagggacgagtatttttgtttcttggccgcatttg
gtcgaggcacgtgttgtggctatatccaatcgtgaggtgaaatacactttgtcagctgat
cgaaatgaaactatagtaaaagaagagatgagagggcctctatccgtccaatggaaccag
tcaaagagggcgattagcgaaaattacatgaaccggttgggaattgatgtaggagagacg
gatgttttagtgcatgcgtgcttgatgacgggtagacgttatatttttggcactcaagga
aaattgtccttggaaaaacaatggagcgacgtaccgtcagctttcgcacttcaggcaacc
gtcggtgatatagccgtacacgattctagctttgtacagtacaaaaacattggggaagta
tttacaccaaagagcatatgttttatgctgggacacccgcattacggagctatgggcgag
gtctcggaaggtggtactagtacgaaaactggcagagtcaagttagccatgtggatcacc
gaggagccaaacttggatttgttaaaacaatcacaatcagacgcaaaatcgcgctacatg
cacggcagtatagcggctcaaagactgggaattaatagccacttgctgagccgcatcacc
ggttctatctacgtcatgcaagggccaagagagcaattagaaaatccgaagcgtaacttg
ggactcaatttgaaatttaacaaaaaaaaccaagaggtgccaggttatacgaaaaaagtt
aacggccagtggttatatagtacaaaggctatcgacttgatacgtgcttacatgcgaaaa
tttcctttgttatttgaaaaactggcaagtaacgtgacaaatgacatctactacgaggat
gagttgtttacagaaccggagtgtatgacggtgagtgctgtatcatcttggttgaaggaa
caaccgttttacaacatcgaaagctgcagctgcgggactgagagtctggattttgaagat
attgaggaaatagaaagagtggtggatgcatttattgaatcccaaaaaaattccccaacc
gggaagaccgtaatgatgcaagtcaagccacatttattgttcaagcctagtcttcacatg
ggtaacttccctcccgatgcaactgcgcaacacaaaatttatgacagggttgtcagtgtc
agagaaagtttcaccgtgcctcttggatatagaggtacaatttttgcaatacagagaaca
gaaaagatttctgatttaatgtacgacattgtattcgacaaggaattcgtaggaggttta
tcattgaatatgtgctcagccaatcgcggttataggctagctccttcagatttcataaac
ttgtcccatggttttcgagctgagaatgtcaagtcaggcaaatcgaatgtggacacatcc
gaaccgtcatcgtggaggtcgccttcgaattcccgaaatcatacctctcgttcgaatacg
agtgcctttgccttgttcaacagccagggtggccttgccccagcctttgtcaagggtgaa
atgcagtttcctgtatcaccgatgaaaataatgaaaaaaaatagtgatcaaacacaactc
aaccacaaaattaccgccgagacaaatgtccaggacaatgtcaacgcacagagcaaagca
cggggagcggtatcgcaggagcaatcaaattctaaggttgaaaatgaaacagcacagatt
gtacaggatggtaagggtcaatctttacaaagatcatcagagtttcaagctctgtggaac
gagttacatcggttacagaagtccagtggttcaaacagtcagcagaaattaccaatgaca
ccaaataccgaatcgaaggaaacgccgagtactgtgaccaattcgccaagggaagctcac
ctttggcctcaagatcccagtgcttttttgaaagcgatgttaaaaatctcagatgataat
tcgaaaaacaatactgcatcatccaacaaacctcctgcattcccacaattatctaaatct
tcagatgcaccacctctggtacaacagttattcgatcatgccagacaagtggaaaatact
aaaaaatcgaacacagtatcctattgttcgcaactgttgacatactttcaactaaaaggt
atgggcatgcctcgctacagttattcaccgaacaaagagactaacttcgtatgcgcacgt
atcttcttacccaatggaagaacgttcggtggtgagttctgtcagagcagggaactcgcc
gctgaaagtgccgctaagagagcgtatacggaattggacttgaacaatataccagaccca
ggtgtcaatatattacctacgcctcctcagcagtggtacaacactcgtcacagggcaata
catccacaaaatattcgaccaatcataaacggtccacctccaatgccaccaatgatggtg
ccaaatccgtttatgagcgtattcaatggtagttcaaatgtaccgcaaagtccaaataat
tcgagtttgttgccaacattttctcagaccagacctcagcaaagacctcatcctggtact
ggaaatagttccaagaattggagaaccgaaaataacaagtctgagcagagaaaaactgcc
gcttttgtaccgctacaagcacagaaacagcatcgcagtgcaaacccaagaaatataacc
ggtactgcaaacttgattgacaacttgcaccgcaagcaacaagagaggaaagaaactgaa
actaatgaagaaaccacatcaaaggtaaccggatcaaaaacaacagacactccaaggcca
caaaatatacaaaatgggctccagaatccactgaaacatcaacaaaaatcggcaaagcag
aggagatcgcgaattgctgccaattttggctctgtttcagttgctaatggagccggatca
aaataa
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