Neodiprion virginianus: 124304567
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Entry
124304567 CDS
T09046
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
nvg
Neodiprion virginianus
Pathway
nvg03022
Basal transcription factors
nvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124304567
09124 Replication and repair
03420 Nucleotide excision repair
124304567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvg03021
]
124304567
03400 DNA repair and recombination proteins [BR:
nvg03400
]
124304567
Transcription machinery [BR:
nvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124304567
DNA repair and recombination proteins [BR:
nvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124304567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
124304567
NCBI-ProteinID:
XP_046618919
LinkDB
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Position
5:complement(9120968..9126042)
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AA seq
402 aa
AA seq
DB search
MADEDDGKEYRWETGYEKTWEAIKEDDDGLLEGAVADIIQRAKRKRQSERHGGARLGMMR
HLYIVLDCSEAMSNQDLKPTRLRCSIKLLEDFIDEFFDQNPISQLGLIITRNKRAEKLSE
LAGNPKKHIKELKGLHLTALTGEPSIQNSLELALKSLKLLPSHASREILVLMGSLTTCDP
GDINTTIEILKSEGVRCSVIGLAAELHICKRLATATGGDHGVVLDDKHFKEQLSIHVDPP
AAATRLDSALVKMGFPHHALHSTTETPMTMCMCHVESSEEDSKLVTTGYLCPQCLSKHCE
LPVECRACGLTLVSAPHLARSYHHLFPVENYKEVTYEGSPSICYGCRRVLTQLDKKVYMC
GKCQQGFCLDCEIFIHETLHTCPGCATNPDTFQISSEKISIN
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgaggatgacggaaaggaatatcggtgggaaacaggatatgagaaaacatgg
gaggcgatcaaggaagacgacgatggcttgttggaaggggcggtggcagacattattcaa
agagcgaagaggaaacgtcagtcggaaagacatggcggtgcaaggctgggaatgatgaga
catctttacattgttctagactgttccgaagctatgtctaatcaggatttgaaaccaacg
agattacgatgttctataaaacttttggaagatttcattgatgaattctttgatcaaaat
cctataagtcaattaggtttgataataacgagaaataaacgggctgagaaattgagcgaa
cttgccggaaacccaaagaaacacatcaaggaattgaagggcttgcatcttacagctctg
acgggtgaaccatcgattcaaaactctctagaactggcactaaaatccctgaaattgctg
ccgtcgcatgcaagtagggaaattcttgtgctgatgggttcgctaactacctgtgaccca
ggggatattaacactacgattgaaattttgaaatctgaaggagtgcgctgtagtgtgata
ggattagctgctgaattgcatatctgtaaacgtttggctaccgcgactggtggcgatcac
ggagttgttttggacgacaagcatttcaaagaacaattgagcattcatgtagatccacca
gcagctgctaccagattagactcggctctggtgaagatgggtttccctcatcatgcattg
cattcaactactgaaaccccaatgacgatgtgcatgtgccacgttgaaagttcagaagaa
gacagtaaacttgtgacgactggatacttatgtccacaatgtctgagtaaacattgcgaa
ttaccggtcgaatgtcgagcatgtggactgacccttgtatcagctccacatttggctcgt
tcttatcaccatttatttccggttgaaaactataaagaagtaacttacgaaggttctcct
tctatatgctacgggtgtagaagagtccttactcaattagacaagaaggtatacatgtgc
ggtaaatgccagcaaggcttttgtttggactgtgaaatttttattcacgaaacactccac
acctgtcctggatgtgcaacgaatcctgatacgtttcagatatcttcagagaagatttca
atcaattag
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