Neodiprion virginianus: 124304894
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Entry
124304894 CDS
T09046
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nvg
Neodiprion virginianus
Pathway
nvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124304894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124304894
03041 Spliceosome [BR:
nvg03041
]
124304894
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124304894
Spliceosome [BR:
nvg03041
]
Complex B
Other components
Prp19-related factors
124304894
Complex C
124304894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
Mad3_BUB1_I
ARM_TT21_C
RPN7
TPR_10
DHR-2_Lobe_A
Terminase_6C
PPR
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
124304894
NCBI-ProteinID:
XP_046619626
LinkDB
All DBs
Position
5:22375622..22379759
Genome browser
AA seq
852 aa
AA seq
DB search
MMQREDSDGNSYIFNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTKSVNLNIVYERALKE
LPGSYKLWYNYLRQRVKQLKGRCVTDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTDQ
CYITRTRQVFDRSLRALPITQHHRVWPLYIGFLKKHNVYETAVRVFRRYLKLAPEDAEEY
IEYLISTGRLDEAALKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPTKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVSTVRDFTQVFDAYAQFE
ELSLSKRMEDAAKNPNPTEEDDIELELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHK
RVMLYEGQPHEIINTYTEAVQTVLPQQAVGKLHTLWVAFAKFYEENGQIADARVVFDKAT
HVAYTKVDDLASVWCEWAEMEIRHDNCKEALKLMHKATTMPSRKVAYHDETETVQMRLYK
SLKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYE
KGIALFKWPNVYDIWNTYLTKFLKRYEGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKL
EEEHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEE
NTREMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQVWKEFEVRHGNEDTMRE
MLRIKRSVQAMYNTQVNMMSAQMLNSATNLSIDDSAGTGDAMRLLDNKIPSTSTDAAVQP
GFKDNIKFVRGVTEGAGRSERQVNNPDEIDIDMDDDSEDEEKEIEEDVPVEKQAIPSKVF
GSLKATKEDEDD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcgagaggattctgatgggaatagttacatcttcaatgaggaggatctgcct
tacgaggaggaaatcctgcggaatccttactctgttaagcactggcaacgctacattgat
cacttgaagaacacgaagagcgttaacctcaatattgtctatgaacgagccttgaaagag
ctgccgggaagctacaagctgtggtataactacttgcgtcagagggtaaaacagctgaag
ggacgctgcgtgacagacccgctctacgaggatgtaaacaatgcttttgaacgagcactt
gtattcatgcacaaaatgcctcgaatctggatggactattgcaccctgatgaccgatcag
tgttacatcacgaggacccgtcaggtattcgatcgctcgcttcgggctcttcccatcacg
cagcatcatcgtgtctggccactttacattggcttcctcaagaaacacaatgtatatgaa
acagctgtacgcgtcttcaggagatatctgaagttagctccagaagatgcagaggaatac
atagagtatttgatatcgacgggaagactggacgaagctgcgctcaaattagcccaaatc
gtaaaccaggacgactttgtgtcaaagcatggtaaatcgaaccaccagctgtggaacgag
ctctgcgaccttatatcaaagaatcctaccaaaataaaatccttgaacgttgatgcaata
atcagaggtggattgaggcgatatactgatcagttgggtccactgtggaattcattggct
gattattacgttcgtagtggcctttttgagcgcgccagagatatctacgaagaagcaatc
cagacagtttccactgtcagggactttacccaagtgtttgatgcgtatgcccagtttgag
gaactcagcctcagcaagaggatggaggatgctgccaaaaatcccaatccaaccgaagaa
gatgacattgaactcgaacttcgattagcaagatttgaacacctcatggagagaagactg
ttgctgctgaacagtgtgttgcttaggcaaaatccgcacaacgttcaagaatggcacaaa
cgagtcatgctctatgaggggcaacctcatgagataatcaacacgtatacagaggctgtt
caaacggtgttgccgcaacaggcagttggcaagttgcacacattgtgggttgcgtttgcc
aaattctatgaagagaatggacagatcgcagatgccagagttgttttcgataaagcgacg
cacgtcgcatacacgaaggttgatgatcttgcttccgtttggtgcgagtgggccgaaatg
gagatccggcacgacaattgcaaagaggccttgaagcttatgcacaaggcaaccaccatg
ccctcacgcaaagttgcgtatcacgacgagactgagaccgttcaaatgagattgtacaag
tcacttaaagtctggtccatgtacgctgatctcgaggagagctttggtacattcaagaca
tgcaaggctgtgtatgacaagatcatagatctcaaaattgcgacgccgcagatcatcata
aactatggtctatttttggaggagaataactatttcgaggaagccttcagggcctacgaa
aagggtattgctctgtttaagtggccaaatgtatatgacatatggaacacgtacctcaca
aaattcctgaaaagatacgagggaacgaaattggaaagaactcgcgatctgtttgaacaa
tgcttggaacattgcccaccaaagtatgcgaaggccctttatttgctgtacgcgaaactg
gaagaggaacatggcttagcaaggcacgcgatgtccgtatacgagcgagcgactagcgct
gttttaccagaagaaagatttgagatgttcaacatatacataaagaaagccgctgatata
tacggagtgccgaagacgcggcagatctatgagaaggcgatcgaagttctgaatgaagaa
aatacgcgggagatgtgtctccggtttgcagagatggaaactaagctcggtgaagtcgat
cgagcgagggcgatttacgctcactgcagtcaaatatgcgatccccgggtaacgtctaat
ttctggcaagtttggaaagagtttgaagtccgccacggcaatgaggacacgatgcgggaa
atgctgcgaatcaagagaagcgtgcaagcaatgtacaacacccaagtaaacatgatgtca
gcacagatgcttaacagtgcgacaaatctctctatcgatgacagtgctggcaccggtgac
gctatgcgacttttggacaacaagataccctcaaccagtacagacgctgctgtgcaaccc
ggattcaaagataatatcaaatttgtacgaggagtaactgaaggagctggaaggtccgaa
cgtcaagtgaacaatccagatgaaatagacattgacatggacgacgacagtgaagatgag
gagaaagaaattgaagaggatgtaccggtagagaaacaagccattccatcgaaagttttt
ggaagcctcaaggccaccaaagaggacgaggacgactaa
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