Neodiprion virginianus: 124305346
Help
Entry
124305346 CDS
T09046
Name
(RefSeq) fibril-forming collagen alpha chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
nvg
Neodiprion virginianus
Pathway
nvg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124305346
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nvg00536
]
124305346
Glycosaminoglycan binding proteins [BR:
nvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124305346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
CFC
Motif
Other DBs
NCBI-GeneID:
124305346
NCBI-ProteinID:
XP_046620611
LinkDB
All DBs
Position
1:complement(941684..959692)
Genome browser
AA seq
1612 aa
AA seq
DB search
MTGRSGRTRLLLLGIAAFLVLLESTETQAARTKIRHHRIRPVQAQQPDTARNTDYDYEPE
YYDTYDDYEEQIKNETQPSVSPVPEENGAPPVRPTSASSGSTSFGENLVGPRLPGSAPTT
SSPDNPPTETVPESPEPPSGGGDNVGCTFDGVPHGADDEWKPDRCTSCRCIRGKAECSQS
IPCLSGGNCDGVVCVQISCETEQYIPLGQCCPVCAEPGPITGGAASLQPNLPSGILPGES
NRVNSIAVSGPRGEPGRPGDGGRQGDAGFPGTPGTPGIPGPPGPPGPAPDVSLYYQQLAL
SQAGQDKGPTGAAAPLYGGPDAYAYMQAQVGPVGPRGPPGPNGNPGPQGFQGIRGEPGEP
GPMGPTGLPGPRGLTGLPGKDGNAGEDGESGPQGSPGPMGPRGLPGMPGLPGMKGHRGFP
GLDGAKGEQGHSGEKGSSGGPGPMGPMGLMGPAGPRGERGREGSPGPPGIRGIDGISGPP
GVPGVPGKSGPPGFPGSPGNKGDQGAQGSKGSMGLQGPRGESGRPGQPGESGPSGPQGKD
GYPGEKGSTGAPGMLGQPGFPGVRGQPGLAGNPGTPGAKGMPGLPGERGYKGEIGAKGDS
GAPGPRGMPGPAGNEGKRGKRGMRGSIGASGPPGERGIPGVRGLPGPDGALGPKGQTGDR
GPVGGSGPKGATGDPGRPGLQGLQGPRGLMGRPGGPGKPGNPGERGIQGADGKPGDIGPM
GLQGLPGPLGLPGDKGYPGEPGRDGEPGAQGPPGPRGDSGKDGPSGAPGPQGPPGSDGGR
GPPGPAGPRGFQGMPGSSGNPGMPGKDGEVGLQGPPGLPGPSGNRGERGFPGERGPVGSP
GAPGLRGESGSQGNDGFPGIPGSKGDKGHSGLPGLIGLPGLRGAPGMPGDKGERGSYGPV
GPEGPAGRMGERGPQGPMGQPGPPGEPAERGDTGPPGVPGEAGAPGNPGERGPQGPQGLQ
GFPGPHGLSGLPGVKGERGYQGLKGDQGSPGATGNPGEPGLPGLVGLTGAKGARGEAGTR
GEPGLMGPPGLPGLLGAAGQPGAPGAPGLAGLPGVKGSQGDTGRTGNPGPMGNPGMPGVE
GMKGESGSEGPPGLSGPPGPQGPAGDRGMPGLPGPAGAVGLRGMRGAPGETGLPGKPGPE
GPLGPNGMPGPAGPPGPGGEAGPEGSPGKQGQPGIAGRPGDKGPPGMPGSSGNPGPSGLP
GPPGQSGPQGPAGERGLRGEAGPQGVEGQRGATGKPGPVGPEGIKGDRGEPGPTGAKGHR
GLIGLQGLQGSPGFPGEKGMVGAPGLDGKNGEIGVRGLPGRDGSQGPQGMPGNTGPRGPP
GEEGRHGATGPPGPPGPPGPPGELGLGYDAASLAALLNAGQGQSKGPDPLSGDEPARIFG
KDITEAERKELIMKAYEQLKASFQKYVKPDGQKQSPAKTCRDLFVAYPEKPSGEYWIDPN
EGDQRDAILVYCDVENRKTCLLPKPPQSPEITYIGNEQEVWLSEMENGMQITYKADTNQI
SFMQLLSSHAEQNVTYHCKNTVGYFDSERRTYRRGLKLLAWNDVELTPRGNQRLRYDMIL
DECRERSHQWGKTMISYQTDKPVRLPILDVGLRDVGKQDQRFSVEIGPVCFR
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgaccgggagaagcggccgaacccggctccttcttctggggattgccgccttcctggtc
ctcctggaaagcaccgaaacccaggcggcgagaaccaagatcaggcatcaccgtataaga
ccggttcaggctcaacagccggacactgcacgtaacaccgattatgactatgaacctgag
tactacgacacctacgacgactacgaggagcaaatcaagaacgaaacgcagccgtccgta
agtcccgtaccagaagaaaacggtgccccgccagtaagaccaacgtctgcatcgtctgga
tcaacatcatttggtgaaaacttggtcggtccgagactgcccggaagtgcgccgacaaca
tcatcccctgataatccgccgactgagacagttccggaatcgccggaaccaccaagcgga
ggtggtgacaacgttggctgcacattcgatggggtgccccatggagccgacgatgaatgg
aagccagaccgttgcacatcgtgccgctgtattcggggaaaagctgaatgttcccaatcg
attccatgcctatcaggtggaaattgcgacggtgtggtctgtgttcagatatcctgtgag
acagaacaatacattcctctgggccagtgctgtcccgtatgcgcagagcctggaccaata
acaggaggagccgcttccctacaaccaaatttaccgtcaggaattctcccgggagagagc
aatcgggtcaattcaattgcagtctccggtccaaggggagagccgggacgcccgggagac
ggcggtcgtcaaggagacgcgggatttccgggaacccccggcactccaggcattcctgga
ccacccggacctccgggacccgcacctgacgtgtccctgtactatcaacaactcgccttg
tcgcaagctggacaagacaaaggtcctacaggagctgccgcacctttgtacggaggtcct
gacgcatatgcttatatgcaagctcaggttggtcccgttggacctcgcgggcctccagga
ccgaacggcaatcccggtcctcagggcttccaaggaatacgaggcgagcccggagaaccc
ggacccatgggaccaaccggcctgccgggacctcgaggattaaccggacttcccggaaag
gatggtaacgctggcgaggacggagagtcagggcctcagggttctccgggccctatgggc
ccgagaggtctaccgggaatgcctggccttcctggtatgaagggacaccgtggatttcct
ggtctggacggagcgaaaggagagcaaggtcattcgggagagaaaggatcttccggtggg
ccgggaccgatgggtcccatggggttaatgggtccagctggtccgcgcggcgagcgaggg
cgcgaaggatctccgggacccccgggaatccgaggaatcgatggcatttcagggccaccc
ggagtgcccggtgtaccaggaaaatcaggacctcccggttttccgggtagccccggtaat
aaaggggatcaaggtgctcaaggttctaagggcagtatgggtctccaaggaccaagaggc
gaatctggacgccccggccaacctggagaatctggaccatccgggccgcaaggaaaagat
ggttacccgggagaaaaagggagtaccggagcacccgggatgctgggacaacccggtttt
cctggagttcgggggcagccggggctagctgggaatccgggaactccgggagcgaagggg
atgccgggcttgccaggcgaaagaggatacaagggtgaaatcggggcgaagggtgactcc
ggagctcccggtcctcgcggtatgcccggaccagccggcaacgagggtaaaagaggaaag
cgaggaatgcgaggttccatcggggcctccgggcctccgggtgaacgcggaatacccggt
gttcgcgggcttcccggtcccgacggcgccttagggcccaaaggacaaaccggagatcgt
ggacccgttggaggaagtggtccaaagggtgcgaccggagatccagggaggccaggtctg
caaggcttgcagggtcctcgagggttaatgggacgtcctggtggaccaggaaaacctggg
aatccgggagagcgaggaattcagggtgcggacggaaagcccggtgatatcggaccaatg
ggactacagggattaccgggacccctgggacttcctggagacaaaggatacccaggagaa
cctggaagagacggtgagccaggtgcacaaggtccaccggggcccagaggtgactctggt
aaggacggaccatcgggtgcaccaggtcctcaaggaccgcccggaagcgatggaggccga
gggccaccaggtcccgcaggtcccagaggattccagggaatgcctggaagcagcggtaac
ccgggaatgccagggaaggacggagaagtaggacttcagggtccacccggacttccggga
ccttctggaaatcgaggagaacgtggttttcccggggaacgtggtccagtcgggtcaccc
ggggcaccgggactaaggggagaatcaggatcgcagggcaatgacggatttccgggtatc
ccaggatccaagggtgataaaggacactcaggactgcccgggctaataggattgcccgga
cttcggggcgcgccaggaatgcctggcgataaaggagaaagaggatcgtacgggcccgtg
ggtcctgaaggaccagcaggaagaatgggcgagcgtgggccgcaaggaccaatgggacag
ccggggccacccggggaaccagctgagcgtggagacaccggacctccgggagtccctggt
gaagccggagctcctggtaaccccggagaaagaggacctcaaggtccccaaggccttcag
ggcttccccggaccgcatggtctttccggattgcccggtgtgaagggggagcgtgggtat
caaggattgaagggagaccaagggagccctggagcgacaggaaatcctggggaaccggga
ctcccgggtctggtcggattgaccggagccaaaggagctcggggcgaagccggtaccagg
ggtgaacctggattgatgggtcctccgggcttgccaggactactaggagctgcgggtcaa
ccaggcgctccgggagctccaggtctcgcggggctaccgggggtcaagggaagccagggg
gacaccggtcgaaccggcaatcccggaccgatgggtaaccctggaatgccaggagtggag
ggtatgaaaggggaaagtggatcggaggggccgccaggcctgagtggtccaccggggccg
caaggaccggcaggagaccgaggaatgcccggactaccggggcccgcgggagccgtcggc
ctcagagggatgcgaggtgctccaggtgaaactggattacccggaaaaccaggacccgag
ggaccgctaggacctaacggaatgcctggccctgccggacctccaggtcctggtggtgag
gccggtccagaagggtctccgggaaaacaagggcaaccgggaattgctggaaggcctgga
gacaagggaccgcctggtatgcctggatcgtccggaaatcctggaccgagtggattgcct
ggaccgccaggacaatctggaccacaaggaccggcgggagaaagaggcctgagaggagaa
gccggccctcagggtgtcgaaggacaacggggtgcgacgggtaagccggggcctgttggt
cccgagggaataaagggtgatcgcggagagcccggaccaaccggtgcgaagggacaccgg
gggctgatcgggcttcaaggactgcagggatcaccgggtttccctggtgaaaagggaatg
gtcggagctcctggcctggatggaaagaacggagagattggcgtgcggggtctcccaggt
agagacggaagccaagggcctcaaggtatgcctggaaacacggggcccaggggtccgccc
ggagaagaaggacgacacggagcaactggaccaccgggaccaccaggtcccccgggaccc
ccgggagaacttggccttggctacgacgcggcatctttggctgctcttctgaacgctggt
cagggccagagtaagggtcccgacccactgagcggtgatgaaccagcaaggatattcggc
aaggatatcaccgaggcagagcgcaaggaacttataatgaaagcgtacgagcagctcaaa
gcgtccttccagaagtacgtcaaaccggatgggcagaaacaatcgccagcaaaaacctgt
agggatcttttcgtcgcatacccggaaaaaccgagtggcgaatattggatagacccgaac
gaaggagaccagcgtgatgcaatcctggtttattgcgatgttgaaaatcggaagacctgc
ctgttgccgaaaccgcctcaatcccccgaaatcacatatatcggtaacgaacaggaagtt
tggctgagtgagatggaaaacggaatgcagattacttataaggccgataccaaccagata
agttttatgcaactactgtccagccatgctgaacaaaacgttacttaccactgcaaaaat
accgtcggctactttgattccgaacgacgaacatacaggcggggattgaagcttcttgcg
tggaacgacgtcgagcttacaccccgtggtaatcagcggctgcggtacgacatgatattg
gacgagtgtcgggaacgttctcaccaatggggcaagacgatgatcagttatcaaacggac
aaaccggttcgtctgccgatattagacgttggcttgagggacgttggtaagcaggatcag
agattttcagtggaaattggtcccgtgtgcttcagataa
DBGET
integrated database retrieval system
