Neodiprion virginianus: 124305396
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Entry
124305396 CDS
T09046
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
nvg
Neodiprion virginianus
Pathway
nvg03030
DNA replication
nvg03410
Base excision repair
nvg03420
Nucleotide excision repair
nvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124305396
03410 Base excision repair
124305396
03420 Nucleotide excision repair
124305396
03430 Mismatch repair
124305396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nvg03032
]
124305396
03400 DNA repair and recombination proteins [BR:
nvg03400
]
124305396
DNA replication proteins [BR:
nvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124305396
DNA repair and recombination proteins [BR:
nvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124305396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
Rad17
BRCT_2
AAA_16
AAA_14
AAA_30
AAA_assoc_2
AAA_7
RNA_helicase
RuvB_N
AAA_19
NTPase_1
AAA_5
nSTAND3
AAA_18
AAA_33
Gp44_lid
Motif
Other DBs
NCBI-GeneID:
124305396
NCBI-ProteinID:
XP_046620729
LinkDB
All DBs
Position
1:976316..981375
Genome browser
AA seq
1103 aa
AA seq
DB search
MSKAITSYFQVISSKKGTDSSSVSNNNKKKRHQVSDEDREKSVSPAKRYKPTKRTSKHHV
LSDSESEVTEVKEKPRKGKSSDREKSRGEKGASGSKTSRRSPKPVKRNKKRHVLSDSEDE
VVEVKEISKKAEYGKKEKLPLKKIATAADVFGNKPVKRIEAPKPSKKLMEEDDDFFFDDK
LEAVLDQLATAETELDREAETGSKKKEIDNRKKQSNGNASITTGSSKEGRKTSKVTRSSE
KTMDDTVTGINEDGQVPKKTMRNLVKQELDDDHKEKGSDKSPEFETSKFIEVPHSNKKTT
KDATYQKGISKIEIDKTTGQKRKRSIEDDDPDPYEALIQKKKHNSALYQQYLQRGGARHP
GSKEIPTGANNCLAGLSFLITGVLDSLERDEVDDLIKKYGGRLLHQVSKKTDYVILGDEP
GPAKLEKTKKLGVKTISEDELLELIRTRPAGQGTSLTDDKHHAGKEKKLPSKMKRKTPEP
ETLISSKLLSSETGNSSKLNSEISDIDPESLISGYSGTTKSSEVLQSSNVPTMVRVPCET
DSQVWVEKYKPKNMKQIIGQQGDKSNAHKLYNWLKNWQKNHSGDVKLTRPSPWAQHDGSF
FKAALLSGPPGVGKTTTVQIVCNALNLDAIEFNASDTRSKRLLKEEVSELLNNKSMKSYF
ADGNNKKPDLDHVLVMDEVDGMAGNEDRGGLQELIALIKTTSVPVICICNDRNHPKMRTL
SNYTFDLKFQKPGMNQIRSAMLSICFKEKIEISKDDLSRLIESTNCDVRQVLNHLSLLAN
NSSIDEVSKTRKCNKDLRLGPWDVVQKVFTFEAHKTMSIHDKSNLFFHDYNIAPLFVQEN
YLGVTPNCPKDQLLETVANAAESLVLGDLVENSIRRNGTWTLLPMQACYSSVIPGTLMAG
NISRQIMFPSWLGQNSKRGKFDRLLQEITMHTRLATSSSKDAINLDYLKHLRDAVVKPLV
DNGAEGTATALNVMNYYHLLREDLDSLTEVSLWPGQHDPMQALESKVKAAFTRAFNKSAI
MRPYAFTKGTEKKKRAQSVYSEDALELEEEEEEASEEDEDTPAVNVKTKTKKAPAAADKK
AAGTSGVKKKSSNPRAGKSKANK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggcgataacctcctactttcaagtgatttcttcaaaaaaaggcaccgacagc
tcctctgtatcaaataataataagaagaagagacatcaggtctcggatgaagacagggaa
aaatctgtatctccggctaaacgctataagcctacaaaacgaactagcaagcatcatgtc
ttgtcagattcggaaagtgaagtgacagaagtaaaagaaaaaccacggaagggaaaatct
tctgacagggaaaaatcccggggtgaaaaaggtgcctcgggctcaaaaacttcccgaaga
tcgccaaagcctgtgaaacgaaacaaaaaacgacatgtcttatcagattcagaagacgaa
gtggtagaagtgaaagaaatatctaaaaaggcagagtatggcaaaaaggaaaaacttcca
ctgaaaaagattgccacagcagctgatgtgtttggtaataagccagtcaagagaatcgaa
gcaccaaaaccttctaaaaaactgatggaggaggatgatgatttctttttcgatgataaa
ctggaggctgtgctggatcagttagcaacggctgaaactgagctggatcgcgaagccgaa
accggtagcaaaaaaaaagaaattgataatcgcaagaaacagtctaacgggaatgcgtcc
attacaacagggtctagcaaggaaggaagaaagactagcaaggttacgaggtctagtgaa
aaaactatggatgatacagtaactggtatcaatgaggatggccaagttccaaaaaaaact
atgcgtaatcttgtgaagcaagaattagatgacgaccacaaagaaaagggcagtgacaag
agtcctgagtttgagaccagcaagttcatcgaagtacctcacagtaataaaaaaacaaca
aaggatgcaacatatcaaaaaggaatatcaaaaattgaaatagacaaaacaaccggacag
aaacggaagcgcagcattgaggacgatgaccctgatccctacgaagcactgattcaaaag
aagaagcacaattctgctttatatcagcagtatctacaaagaggcggtgctagacatcca
ggctctaaagaaataccaacgggagcaaacaattgcttagctggtctgagtttcctgata
acaggagttttggattcattggaaagagatgaggtggatgatttgataaaaaaatatgga
ggacgtctgttacatcaagtttcaaaaaagacagattatgtaatactgggtgatgaacca
ggaccagcaaaattggaaaagactaaaaaacttggagttaaaacgatatccgaggatgaa
ctattggaactaattcgaacgcggcctgcgggtcagggaacttcattaacggatgacaaa
catcacgctggcaaagaaaagaagctgcctagcaaaatgaagagaaaaacgccagagcct
gaaacactgatatcttcaaaacttctgtcttcagagactggaaactcatcaaaacttaat
tcagaaatctctgacatcgatccagaatcactgatatctggatattcgggtactacaaag
tcgtcagaagttttgcagtcaagcaacgtacctacaatggttcgtgtaccttgtgaaact
gactctcaagtttgggtcgagaagtacaagccaaaaaatatgaagcaaattatcggtcag
caaggggataaaagcaatgcccacaagctttacaattggctaaaaaattggcaaaagaat
cacagtggagatgtcaagttgacgcgacctagtccctgggcacaacatgatggatcattt
ttcaaagctgctctcttatctggcccaccaggagttggaaagactacgacggtacaaatt
gtttgcaatgctctaaacctggatgctatagaattcaatgcttctgatactcggagcaaa
agactcttgaaagaagaagtctccgagttgctgaataacaaatccatgaagagctatttt
gctgatggtaataataagaaaccagatttggatcacgttttggtgatggatgaagttgat
ggaatggctggtaacgaagaccgaggtggtctgcaagaactgattgcactgattaaaact
acaagtgtacctgtcatttgtatttgtaatgatagaaaccatcctaaaatgagaactctg
tcaaattacacgtttgacctcaaatttcagaagcctggaatgaaccaaattaggtctgca
atgttgtcgatatgcttcaaagagaaaattgaaatctccaaggatgaccttagccggtta
atcgaatccaccaattgtgatgttcggcaagttttgaatcacttatcgctcttggcaaat
aattcgtcaatcgacgaagtgtctaaaacaaggaaatgcaacaaggatttacgtttgggt
ccctgggatgttgttcaaaaagtttttacttttgaggcacacaaaactatgtcgatacac
gacaagagcaatctctttttccatgattataatatcgcgcctcttttcgtccaggagaat
tacctgggtgtaacaccaaactgtcccaaagaccagctattagaaaccgtagcaaatgcg
gcagaaagtttggtgctaggagatttggttgaaaattcaattcgtcgcaatgggacctgg
acattattgccaatgcaagcttgttactcttccgtaattcccggcacattgatggccggt
aacatttcgaggcaaatcatgtttccttcttggcttggtcagaattctaaaagaggaaaa
tttgacagattacttcaagaaatcacaatgcacacgcgactggcaacatcgtcgagcaaa
gatgcgataaatttagattatctgaagcatttgagagacgcggtagtcaaacctttagtt
gacaatggtgcagaaggtactgccacggcactgaacgtgatgaactactatcacttacta
agggaagacttggactcactaacagaggtctcgttgtggccgggacagcatgaccctatg
caggcactggaaagtaaggtcaaagcagctttcacgagagcgttcaataagagtgccatt
atgagaccatacgctttcaccaaaggcactgaaaaaaagaagcgagctcaatctgtgtac
agcgaagatgctttggaattagaagaagaagaagaagaggcgtcagaggaagacgaggat
actcctgccgtaaacgtgaagactaagacgaagaaagcacctgccgctgccgataaaaaa
gcggctgggacttcgggagtaaagaaaaagagtagcaacccacgcgcgggaaagtcaaag
gcgaataaatag
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