Neodiprion virginianus: 124305422
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Entry
124305422 CDS
T09046
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
nvg
Neodiprion virginianus
Pathway
nvg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124305422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nvg04121
]
124305422
Enzymes [BR:
nvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124305422
Ubiquitin system [BR:
nvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124305422
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
124305422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
EIF3I
Beta-prop_TEP1_2nd
zf-C3HC4_2
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
zf-C3HC4
Beta-prop_WDR35_TULP_N
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_DCAF12
zf-RING_UBOX
zf-RING_2
Beta-prop_CAF1B_HIR1
zf-C3HC4_3
RING_XB3-XBAT31
WD40_like
WD40_RFWD3
zf-RING_5
Beta-prop_IFT140_1st
zf-C3HC4_4
WDR90_beta-prop_4th
Beta-prop_RIG_1st
TRAF3_RING
zf-RING_10
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
124305422
NCBI-ProteinID:
XP_046620798
LinkDB
All DBs
Position
5:8232178..8293621
Genome browser
AA seq
667 aa
AA seq
DB search
MAAEEGPNLSGARSGARATLKRPLNASSVMQGIGGTLEDKSSDYLCPICFEVINEAHITR
CGHTFCYRCIVRSLEVSSRCPKCTFALGQQDIFPNFLLNELIAKYKTRLRGVAELRRGRG
DSWINGDEVGSSSFIPSNDGLRDFVASESAHLSLSDVNVMLEVLTQKKLLLEAESCASQN
KLLHEFLKHLLRRKEEQRNQLTKEVALIKRDMAEVEKILRDIQSRCPRVEDLNASSETDT
AQVSAIKKEMISLLGMIDSAMQSDGGDEAFPTVAARTPTGSVLALRRKRMHAHFDDFVKC
YFDSQAKELHFGRDRAAAAANQGSSSGLNVFRENLVKFSRYSALRQLATLNYSSDIFNSS
TIVSSIEFDKDSDFFAIAGVTKRIKVFDYGAVIRDAVDIHYPCVEMVSSSKISCISWNSY
HKALLASSDYEGTVTVWDAETGQRTKAFQEHEKRCWSVDFNDVDTRLIASGSDDARVKLW
SLNVDHSVASLEAKANICCVKFNPRSSCHLAFGSADHCVHYYDLRNMKEPLCVFKGHRKA
VSYVKFINGENIVSASTDSQLKMWNVNSPHCLRSLVGHVNEKNFVGLATDGDYVACGSEN
NALYVYYKGLSRQLFSYKFDAARSVLELQERKEEETNEFVSAVCWRQMSNVVVAANSQGI
IKILELV
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaggagggtcccaacttgtcgggggcccgaagcggggcccgggcgaccctg
aaacggcccctcaacgcgtctagcgtcatgcagggaatcggtggcaccctggaggacaag
agcagcgactacctctgcccgatatgcttcgaggtgataaacgaggcgcacataacgcgg
tgcggacacacattttgctaccgctgcatagtgcgatcgctggaagtgagctcgaggtgc
ccgaaatgcaccttcgccctcggccagcaggacatctttcccaatttcctgctcaacgag
ctcatcgccaagtacaaaacgcggttacgaggagtcgcggagttgcgacgaggccgcggg
gactcgtggataaacggcgacgaggtgggatcctcgtcgtttattccgtcgaacgatggt
ctgcgtgactttgttgcgtctgaaagcgctcaccttagcctctccgacgtgaacgtgatg
ttggaggtccttacgcagaagaaactgctccttgaggcggagtcttgcgcctcgcagaac
aagcttctccatgaatttctcaaacaccttctccgtcgaaaggaggaacagcgtaaccag
ctgacgaaggaggtcgctttgatcaagcgtgacatggccgaggtcgagaagattctcagg
gacattcagagccgatgtcctcgcgtcgaggaccttaacgcatccagcgaaacggacacc
gctcaggtctcggcgattaaaaaagagatgatcagcctgttggggatgatagactccgcg
atgcagagtgacggtggggacgaggcttttcctaccgttgcagcgcgaactccgactggc
tcggttctcgcgctgaggaggaagcggatgcacgcgcacttcgacgacttcgttaagtgc
tacttcgactcacaggcgaaggagctccactttggaagggatagagcggcggccgcagcg
aaccagggatcctcttcagggctgaacgtcttcagggaaaacctggtaaagttctcaaga
tacagcgctctgcgtcaactcgctacgctcaactactcctcggatatattcaacagctcg
accatcgtctcgagcattgagttcgacaaggacagcgacttcttcgcgatagccggggtc
acgaagcggataaaggtcttcgactacggtgccgtgattcgtgacgcggtcgacatccac
tatccctgcgtcgagatggtatccagctctaagatatcctgcatatcgtggaactcgtac
cacaaggcgttgctcgcttcgtctgactacgagggtaccgttaccgtctgggatgccgag
actggtcaacgtaccaaggcctttcaggagcacgagaagcggtgctggtccgtagacttc
aacgacgttgacacacggctgatagcttctggctctgacgacgcccgcgtaaagctctgg
tcccttaacgttgaccactctgtcgcctctctggaagctaaggcgaacatctgctgcgta
aagttcaacccccgaagctcctgccacctggccttcggctccgcggaccactgcgtgcac
tattacgacctcaggaacatgaaggagccgctctgcgtgttcaagggtcaccggaaggca
gtgtcctacgtcaagttcattaacggtgagaacatcgtttcggcaagtaccgactcgcag
ctcaagatgtggaacgtaaacagtcctcactgcctcagatctttggtagggcacgttaac
gagaagaactttgtcggtttggcgacagatggcgattacgtcgcatgtggatcggagaac
aacgcactctatgtttactacaagggactatcgcggcaactcttctcctacaagttcgac
gcagccaggagtgtccttgaacttcaggaacgcaaggaggaggagaccaatgagtttgtc
tcggccgtatgctggcggcagatgtcaaatgttgtcgtggcggccaattctcaggggatc
atcaagatcctcgaactcgtctga
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