Neodiprion virginianus: 124305691
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Entry
124305691 CDS
T09046
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nvg
Neodiprion virginianus
Pathway
nvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124305691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124305691
Enzymes [BR:
nvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124305691
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124305691
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
CAF20
Motif
Other DBs
NCBI-GeneID:
124305691
NCBI-ProteinID:
XP_046621301
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All DBs
Position
5:7025336..7041735
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AA seq
586 aa
AA seq
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MEVTRANFQNVLDDLDSVIENASFLAIDGEFTGLNSGPDTSAFDTPAQYYAKLRSGSMDF
LLVQFGLSIFTYDADKKKYIQQSYNFYVFPRPLNRAAPDCRFMCQASSMSFLADRGFDFN
KLFNKGIPYLTSAEEEKLGKKLEERQKARDDGLELIPIPDDDRPQIEEICTRINDFYNSE
AEELTIDRCNAFIRRIIHQEARMRWPNKLRLEGKTDSSGQWLVVQKMGSKEEEEKKEVER
KEKEQNDIKQAVGLSALLRKISDSGKLIVGHNMLLDLCHIVHQFFSTLPESYHEFKSLVH
CLFPKLLDTKIMCQSSQFKESIPCSVLNALHETVSKSPYCIPEVDVVPDRSYTSSVEKYH
EAGYDAYITGLCFISLSNYLGTLQTPEISVVLPDSPLLNPFINKLLITRLKDFPYIDLTG
KDPNPRRDHVFHITFPKEWKLSDISQLFSPFGGIYVSWLTDTTAYVGLNRRDQSSAVNKH
NFANQNIRLQKYAEHQALIEVKNHSPAHQGDRKRKLSSSDNITATENTGRKPEVNGEQGQ
TVDNEGWETASGKRRRNRKGASNSAGNSGSSGDIRKKPFAELERWG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaacacgcgcaaattttcagaatgttcttgatgatttggacagcgttattgaa
aatgcatccttcttagctatcgatggagagtttacaggattaaattctggacctgatacc
agcgcctttgacacacctgctcagtactatgccaagcttagatcaggatcgatggacttt
ttgctagtacaatttggattgtccatttttacttatgacgcagataaaaagaaatacatt
cagcaatcgtacaatttttatgtatttccaagacctttgaatcgtgcagctcctgactgt
cgattcatgtgccaggcatcttctatgtcgtttcttgcggatcgaggatttgatttcaac
aaactgttcaataagggtataccttatttgactagcgccgaggaagagaaacttggtaaa
aaacttgaagagaggcaaaaagccagggacgatggtcttgaattgattcccatcccagat
gatgacaggccgcaaattgaggaaatatgcacccgaatcaatgatttttacaactcagag
gcagaagagttgacaattgataggtgcaacgcattcatcaggaggattatacatcaggaa
gcaagaatgcgatggccaaacaagctcaggttagagggcaaaacagatagtagtggacaa
tggttggttgtgcaaaaaatgggaagtaaagaagaggaagaaaagaaggaggtggaacgg
aaagagaaggaacaaaatgatatcaaacaagcagtgggcttgagtgctttgttgagaaaa
atttccgattctgggaaactgattgttggtcacaatatgttgctagatctctgccacata
gtccatcagtttttctcaacccttccagaaagttatcatgaattcaaatcgcttgttcac
tgcctgtttccaaagttattggacactaaaataatgtgtcagtcatcacaattcaaagaa
agcattccgtgttcggtattgaacgctttacacgaaactgtgagcaaatcgccctactgt
ataccagaagtggatgtcgttccagatcgcagttacacctcttcggtcgagaagtatcac
gaagctggctacgatgcttatataactggattgtgctttatttcgctgtccaattaccta
ggcacgttacagactcccgagatatctgttgtgctgccggactcgcctctgttgaatccg
ttcataaacaagctgctcataacaaggttaaaggatttcccttatatagacttgactgga
aaagatcccaatccacggagagaccatgttttccatattactttcccaaaagaatggaaa
ctcagcgacatctctcagctgtttagccctttcggtggcatctacgtgtcttggttgaca
gacacaacggcctacgttggtttaaatcgacgagatcagtccagcgcggtgaataaacac
aatttcgcgaatcaaaatatacggctgcaaaaatacgcggagcatcaggctttgattgaa
gttaaaaaccatagccccgcccaccaaggagaccgaaaacggaagctctcgtcgtctgat
aatattacggctacggagaatactggcaggaaaccggaagtgaacggcgaacagggtcag
accgtcgacaacgagggttgggaaacagcttcaggtaaacgacgccggaaccggaagggg
gcttcaaattcagctggaaattcaggttcatccggagacatccgcaaaaaaccattcgcg
gaattggagagatgggggtag
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