Neodiprion virginianus: 124306013
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Entry
124306013 CDS
T09046
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nvg
Neodiprion virginianus
Pathway
nvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124306013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124306013
Enzymes [BR:
nvg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124306013
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124306013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
RNA_bind
CCD48
Motif
Other DBs
NCBI-GeneID:
124306013
NCBI-ProteinID:
XP_046622064
LinkDB
All DBs
Position
5:5129604..5144446
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AA seq
537 aa
AA seq
DB search
MYNVTASNFGELSPKIRESLTRAKFVSFDCEFSGINTFEETKVSLFDTVEDRYQILKSSI
KRCVAIQVGLTTYNCDRNANKYKAEVFNFHLFPKVAPGRDTVFEWRASAVEFLCSHKFDF
NKLVYDGISYLNEEEEQDLRRRVADNVLLRNIERSISYTEEDKLKESYSRVAEWLKTSNV
GESMSFDAASPMLEYLMQKELRTRYSQIWTEPRNGKIILQRVDKELRKILEEKEENKLEK
KLVDFYLGFSDLFKLMVSLKKPIVGHNLLLDLMFMHQQFYKPLPDKYSIFKNNIHRLFPT
IYDTKHLSFELHRLVQKKKLWESNGLATLYNYFKVNKGQILALNSPQISLGDEKSSETDR
FHEAGWDSYCAGYCFIKLAHVFAVLHYGGDTELRPLTNAEILSGPKEHANCINLIRASIS
HLNLAGPDPVCARPQWLHVKCLGANKMNVSQIAEMFSPYGAVDVKILKRHQALVAVGNHG
IARDILTRFRSSRDIQVAPYSLFRHSPALQILLWGGILVSGGALAWVMHRNLQKSSV
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtataatgtgaccgcgagtaattttggagaattgagcccgaagatacgcgaatctctg
actagagcgaagttcgtatcgttcgactgtgagttcagcggtataaatacgttcgaagag
acgaaagtgagccttttcgatactgtcgaagaccgatatcagatacttaaaagcagtatt
aagcgatgcgtcgcgattcaggttggcctgacaacttacaactgcgaccgaaatgcgaac
aagtataaagccgaggtcttcaattttcatctatttccaaaagtagcgccgggtagagat
accgtatttgagtggcgcgcctcagcggttgaatttttgtgctcgcacaaatttgatttc
aacaagctcgtctacgatgggatttcctacctcaacgaggaagaagagcaggatctgcgt
cgcagggtcgctgacaacgtcctcctgcggaacatcgaacgatctatatcttacacggaa
gaagacaaactcaaggaaagttacagccgtgttgcagaatggctgaagacttctaatgtc
ggggaatcaatgagcttcgacgccgcatctcccatgctagaatatttgatgcagaaagag
ctgaggaccaggtactcgcagatttggacggaaccacgaaacggaaagatcatcttacaa
agagttgacaaagaactgcgcaaaatactcgaagaaaaagaggagaataaactagagaaa
aaattggtcgacttttacctaggattctcggacctgtttaaactcatggtcagtttgaaa
aaaccaatcgtcggacacaacctactcctcgatcttatgttcatgcatcaacagttttac
aaacctctaccagacaaatatagcatcttcaagaacaatatccacaggttatttcccacg
atttatgacacaaaacatctcagctttgagctgcaccgactagtacagaaaaaaaaattg
tgggaatccaacggtctggcaactttgtacaattacttcaaagtgaacaagggccaaatt
ttggctctcaactcgcctcaaatctcactgggcgatgaaaaatcatcagaaacagacagg
tttcatgaagctggctgggactcgtactgcgcaggctactgtttcataaagttggctcac
gtttttgcagtcttacactacggaggcgataccgaattgaggcctctaaccaatgctgaa
atactctcaggtccgaaagagcatgcgaactgtataaacttgatacgtgccagcataagc
cacttaaacttggctggtcctgatccagtctgtgcgaggccacaatggcttcacgtcaaa
tgtctcggagcaaacaagatgaatgtttctcagatcgctgagatgttctcaccgtatgga
gcagtggacgtgaaaatactgaagcgtcatcaagctctcgtcgctgttggaaatcatgga
atcgctcgagatatattaacgcgtttccggagtagcagagacattcaagtggcgccctac
agtctgttccgacattctccggctctgcagattctcttatggggagggatcctcgtctcg
ggcggagccttggcatgggtgatgcataggaatctgcaaaagagttcggtgtag
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