Neodiprion virginianus: 124306052
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Entry
124306052 CDS
T09046
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
nvg
Neodiprion virginianus
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124306052
Enzymes [BR:
nvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124306052
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124306052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_DHX34
Helicase_C
DEAD
OB_NTP_bind
HA2_C
HA2_N
ResIII
ATPase
nSTAND3
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
124306052
NCBI-ProteinID:
XP_046622126
LinkDB
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Position
5:26179523..26185668
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AA seq
1148 aa
AA seq
DB search
MSYRKMHDEERTRRSSAKRKRHEDMRSRRNSDGERSDPRRDERSDFSFQKYRYELSKVFS
ANPNLVQDPEDFWKFVGKYEAVEKKRGSMGAEDKLLNDSQQSRDPTVYHRSHCLNVRVNL
SLGELCARVPPAKELTDSKLCTFRDVINLYLDFKQKEKFAKLKKLRESQANLPVYQYRDE
IVEAVKNERVVIIAGDTGCGKSTQVPQYLYKGGFGRIACTQPRRIACISLAKRVAFETLT
ENLTEVGYQIRFEKQRNQDTKITFITEGLLLRQVSGEMGLSHYDVIVLDEVHERHLHGDF
LLGIMKCIIHQRQDLKLVLMSATINIQLFSNYFAKENVKVIQVPGRLYPIQLNYRPIAVD
DLRQKSDRFNPSPYVQIMQMIDKKYPQDEKGDLLVFLSGMSEITAVVDCAKEYASKTNNW
IVLPLHSTLSIAEQDKVFDYAPDGVRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDP
ICKMQRLKEFWISKASAEQRKGRAGRTGPGVCYRLYSEEEYTALEKYSTPELQRVPLDSL
LLQMVAMGLPDSRKFPFIEPPPPESIENSILSLKEHGALTDDEKLTVIGKTLSRLPVDIT
IGKMLVMGSLFHQVEPVLSLAAALSIQNPFTNRAYRDTECENSRKKLESDHGDPITLLNA
YKEWLEVKQESSREVRGNSSTSRKWCKRRGLEEQRFYEMTKLRTQFKELLQDCGLLKNLQ
EPSSSMTSTERMLRHGEMKLLKTLKRTYKQTAPRKRKELKLDLFDIQMEDKDDNDGEIDI
KDVEFRMRNDSSQVQNLLTAATACSYKDLMMLKLILCSGLYPQFACADEFNYCKSTSEQL
FHTKAKPYIALHPMSFFGNHPQVLQLEEPDIMSIPAFKSKSPLSPKHQLLTYLSLLETTK
PYLVNTMRMPAAQTLLLFAHEIDTNYTFSILVCDSWLKLEFPMPDSGQTLLMKATKLRQK
WDMLLTHRLEEASPSITSKKDTSQVEYELNQELIQFMHTTVPYTIKRLLPADLKIIYVGC
GENYVEVKPNPFQSDFECETNCGKGGVRLTNNITFNCLVESDWSDKLAVDMIETEWNCAN
CGITTPMTSIEKLQHQSNCFVINEDDHQASIEPPTEQKPNSKPYDCPECKKTIYLTPIEI
LRHKKQHL
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgagctatagaaaaatgcacgacgaagaacgaacgagacgttcatctgctaaacggaaa
agacacgaagatatgagaagtaggaggaattctgatggagagagatccgatccacggcgg
gacgagcggtcggatttttcatttcagaaatatcgctacgagctgagcaaagttttctct
gcaaatcctaacctggtgcaagacccagaggatttttggaaatttgtaggcaagtatgag
gcggttgagaaaaaacgtggtagtatgggagcggaggacaagttgctcaatgattcgcaa
cagtcgagagacccgaccgtctaccacaggtcacactgcttaaatgtcagagtgaattta
agtttgggagaactgtgtgcacgagttccacctgcgaaagaattaacagacagtaaatta
tgcacatttcgagacgtaatcaatctctatctagactttaaacagaaggagaaatttgct
aagttgaaaaaactcagggaaagtcaagccaatctgccggtctatcaataccgggacgag
atcgtcgaagctgttaaaaatgagcgtgttgttatcatagctggggacacaggatgtgga
aagtctactcaagttcctcagtacttgtacaaaggtggattcggaagaatcgcctgtact
caacctcgcagaatagcttgcatatcgctggctaaacgtgtcgcatttgaaactttgact
gagaaccttacagaagttggctaccagatcaggtttgaaaagcagagaaatcaggacact
aagatcacgtttattaccgagggactgctgctgcgccaggtatcgggtgaaatgggatta
tctcattacgacgtaatcgtgctcgacgaggtgcacgagagacatttacatggtgacttt
ttgttaggaattatgaaatgtataatacatcagagacaggatttaaaactagtgctaatg
tctgctacaataaatattcaactgttcagtaattactttgccaaagaaaatgtcaaggtg
atccaagttccaggtagactgtatccgatacagttgaactatcgaccgatagcagtagac
gatttgcgacaaaaatccgatagattcaatccaagtccgtacgtgcaaatcatgcaaatg
attgacaagaagtatccacaagacgaaaagggcgatttactcgtattcctcagcggtatg
agcgagattactgcagttgttgattgcgcaaaggaatatgcttctaaaactaacaactgg
atagtgttgcctttacacagtactttgtccatagctgaacaagacaaggtgtttgattac
gccccagatggggttcgtaaatgcattgtctctacaaatattgctgaaacgtcaataacc
attgacggtatcagatttgttgtggacagtggaaaggtgaaggaaatgagctatgatccg
atctgcaaaatgcaacggttaaaagaattttggatcagtaaagcgagcgcagagcaaaga
aaaggaagagctgggagaacgggacctggtgtttgctacaggctttattctgaagaggaa
tacacagcgttagagaaatactcgactcctgaacttcagcgagtgcctctggactcctta
ttattacaaatggttgccatgggactaccagattcgcgaaaatttccgtttatagaacct
ccaccgccagagagcattgaaaactcgatactttcattgaaagaacacggtgctttaacc
gatgatgaaaaactaactgtgattggcaaaacactttcgagactcccagtcgatataact
ataggaaaaatgttggtgatgggctcactatttcaccaagtcgaacctgttttatcgctc
gctgctgctctcagcattcaaaatccgttcacaaacagagcatacagagacactgagtgt
gagaactctaggaagaaactagaatctgaccatggggatcctataactttattgaacgcg
tacaaagaatggctggaagtaaaacaggaaagcagtcgtgaagtcagaggaaattcaagt
acgagtagaaagtggtgcaaacgacgagggctggaagaacaaagattttatgaaatgacc
aagctacggacgcaattcaaggaactgcttcaagattgtgggttgctaaaaaatctccag
gaaccaagctcctcgatgactagcacagagcggatgctgaggcatggagaaatgaagttg
ctgaagacgcttaagcgtacttacaagcaaacggcacctagaaaacgtaaagagttgaag
ttagacctgtttgatatacaaatggaagacaaagacgataatgatggtgagattgacata
aaggacgtagaatttcgcatgagaaacgactcgtcgcaggtccagaaccttcttactgca
gcaactgcctgcagctacaaagacttgatgatgctaaagttaattttgtgcagcggattg
tatccccaattcgcttgcgctgatgaatttaactattgtaaatctaccagtgagcagcta
tttcacacaaaagccaagccctacatcgctctccacccaatgagctttttcgggaaccat
ccacaagtcttgcaacttgaagaaccagacatcatgtcaatcccagcattcaaatcaaag
tctccgctcagcccgaagcatcaactgctaacctacttgtcactcctagaaacaaccaaa
ccatatttagtaaatactatgaggatgccagctgcccaaacgctactgctttttgcgcat
gaaattgataccaattacacattttcaattttagtctgtgactcgtggctaaaattagaa
tttccaatgccggacagcggacaaacattattgatgaaagccactaaactaagacagaaa
tgggacatgcttttaacccacagattggaagaagcctcgccgtcaatcacttccaaaaag
gatactagccaagttgagtacgaacttaatcaggagctgatacagttcatgcataccaca
gtaccctacactatcaaacgcttgttgcctgccgatttgaagataatttacgttggctgt
ggtgaaaattacgttgaagtaaaacccaatccctttcaaagtgactttgagtgcgaaacg
aattgtggaaaaggtggcgtccggttgacaaacaatatcaccttcaactgcctcgttgag
tcagactggagtgataaattagcggtagatatgatagaaactgaatggaactgcgcaaac
tgtggcatcacgactccaatgactagcattgagaagttgcagcatcagagtaattgcttc
gtaataaacgaggatgaccatcaggcttctattgaaccacccactgagcaaaaaccaaac
agcaaaccctacgattgtccagagtgcaaaaaaaccatttatctcacgcctatagaaata
ttaagacataaaaaacaacacttgtaa
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