Neodiprion virginianus: 124306232
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Entry
124306232 CDS
T09046
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
nvg
Neodiprion virginianus
Pathway
nvg03013
Nucleocytoplasmic transport
nvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124306232
03015 mRNA surveillance pathway
124306232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124306232
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124306232
mRNA cycle factors
P-body specific factors
124306232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
OrfB_IS605
Inhibitor_I53
Motif
Other DBs
NCBI-GeneID:
124306232
NCBI-ProteinID:
XP_046622632
LinkDB
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Position
5:25603590..25607759
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AA seq
1166 aa
AA seq
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MSEIQNDSQEAEKVSPDVSEVDKEFLMEYIREAEQRFSTKEKIRLANLNVSRPPDSHFSK
LDSSLKKNTTFVKKLKNFCTAQLDTVLKDMSNLNLTKYISEVATALVEAKLKMTDVAPAV
KVCSYLHQNYAEFGAHFFENWQRILSFKVGDKIPNPSKLRVDLRFYAELVNAGIFTHKQG
LPLLGSVLTVLINMDKEDHNNVTIILSFCRHCGEDYAGLVPRKIRELSELWPGEPLPKSR
LLSADKQQNVRTLLRDYYNSLCKHLLKEHKELQAFEKQNRKILQTRGELSSERKEKLETL
QVSYERLFNGVQSFSETLDESMPELPVDMEVKTEAEESFKMTCDGEDSGTTTEDMWGDEE
TKRFYEVFPDLTVFLPGSYSKEVPVLKPDENQLTEEALDEELVLEELEDTDKVAEEPEAE
VEETHVTNISNKILLDAFLTHLPNCVNREMIDNAAVDFLMNLNTKHNRKKLIKALFGVSR
IRLDLLPFYSRLAGILYPVMPDVANDLCLMLKQDFKYHVRKKDQINIESKIKVVRYIGEL
VKFKLYSKIEALYCLKVLLHDFTHHHVEMACNLLETCGRFLFCSPDSHQRTKIYLEQMMR
KKAVTALDSRYVTIIENAYYFVNPPESTGGIAKKERPPMHEFIRKLLYQDLSKANTDKVL
RLMRKLDWEDDNISTYAIKCLVAAHNVKYLNIRCVGSLLAGLVAHYEAVGPYVVDGVLED
IRLCMEVNLPKYNQRRIAMVKYLGELYNYRLVESGDIFRTLYLLITFGVSTDHTVPTLLD
PPEHLFRIRLVCTLLETCGQYFSGGSSKKKLDYFLIFFQHYYWFKRSDPVWTVENPFPVS
VDYMYRDTLTMLRPKMQLFQGFKEARCAVDELRNTLYPSLARIEVKEDEQYSGEPRASDS
NNESEAMGAIPEVDEEVTTPTPIASGNGSGDAKGILAELHFDESEEYSEAQSEDDWATDG
YREGNHGTQENTQGEFSLSAGVSEGVVMDPSELDAALPMAPRRVGCPEDDDFLSALDKMV
SDNIQDRMRDSVKPQQVDISVPLHVKSTKKTYEQLREGPSDNTTVDFVLMLRKGNKQQYK
NLAVPVSSELAMNLRNREQEQKEEKERVKRLTLNITERQEEEDYQETINQGTRPVTVNLN
RERRQKYNHPKGAPDADLIFGPKKIR
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagattcaaaatgacagtcaagaggcggaaaaagtatcacccgatgtgtcagag
gtggacaaggagtttctgatggaatatattagggaagcggaacagcgtttctcaacaaag
gaaaagatccgattagcaaacctaaatgtgtcccgtccgcctgattcgcatttcagcaaa
ctggattccagcttgaagaaaaatactacatttgtcaaaaagctcaagaacttttgtacg
gctcagctggataccgtccttaaagatatgagcaatttgaatttaacgaaatatataagc
gaagtggcgacagctcttgtagaggctaaattgaaaatgactgatgtcgcgccagctgtg
aaggtttgcagttacctgcaccagaattatgccgaatttggcgctcatttctttgagaat
tggcagaggatattgagtttcaaagtcggtgacaagattccaaatcctagcaagctaagg
gtagatttaagattttacgctgagttagtcaatgctggcatatttacgcacaagcagggt
cttccgcttttgggcagcgtgctcaccgtactcattaatatggacaaagaagaccacaac
aacgtaacgataattttgagtttttgccgtcactgtggtgaggactatgcgggtctggta
ccaagaaaaataagagagttgtctgagctatggccaggcgagcctttgcccaaaagcaga
ctactgtctgccgacaagcagcagaatgttcgaacactactacgggactattacaactct
ctgtgcaaacatctactcaaggaacacaaagaacttcaggcattcgaaaaacagaatcga
aagatactgcagaccagaggtgaattgagctcagagaggaaagaaaagttggaaactctg
caggtatcctatgagcgtttgttcaatggcgtgcaaagcttttcagaaacattagacgaa
agcatgcctgaactgccagtcgacatggaggttaaaacagaagcagaagagtcttttaag
atgacctgtgacggtgaggatagcggcacaacaacagaagatatgtggggcgatgaggag
actaagagattttacgaagtattcccagacctcaccgtatttttgcctggttcttattca
aaagaagtacctgtgcttaaacctgacgaaaatcaactaacagaagaggctctggacgag
gaattggtgctggaagaactcgaggacacagacaaagttgccgaagagccagaggcagag
gttgaagagacacacgtcacgaatatcagcaacaaaatattattggacgcgtttctgact
caccttcccaattgtgttaatagagaaatgattgacaatgcagctgttgatttccttatg
aatttaaacacgaagcacaatagaaagaaactcattaaggccctgtttggtgtgtccaga
attcggctagatttgctgcccttctactcacggcttgccggcatcctttatccagttatg
ccagacgtcgctaatgacctctgtctaatgctcaagcaagattttaagtaccacgttaga
aagaaagaccagatcaacattgagtcaaaaataaaagttgttcgttacatcggtgagctt
gttaagttcaaactgtactcaaaaattgaggcactttactgtcttaaagtactattgcac
gatttcactcatcaccatgttgaaatggcttgcaatctattagagacgtgcgggaggttc
ttattttgttccccagactctcatcagcgcacaaaaatttacctggaacaaatgatgcga
aaaaaggcggttactgctttggattcgcgttacgtaacgataatcgagaacgcttactac
tttgttaatccacccgagtcgactggcggtattgcaaaaaaagaaagaccacctatgcac
gagtttattagaaaactactttatcaggatctgtccaaggcaaatactgacaaggtattg
agactaatgagaaaactggactgggaggatgacaatatttctacgtatgctattaaatgc
cttgtagccgcccataatgtaaagtacctgaacataaggtgcgttggtagtttactagca
ggtttggtggcgcattatgaggctgttggcccttacgttgtagatggcgttctggaagac
ataaggctgtgcatggaggtaaatttgccaaagtataaccaacgtcgtattgcaatggtc
aagtacctcggggaattatacaattatcgcctagtcgagagcggcgacatcttccgcact
ctctacctgctcataactttcggcgtttctacagatcatacagtacctacgctccttgat
ccgcctgagcatttgttcagaatccgtttggtctgcacgctcctggaaacatgtggtcaa
tactttagtggtggttctagtaagaagaaactggattatttcctaatattcttccagcat
tactactggttcaagcgtagcgatcctgtatggaccgtcgaaaatccatttccagtcagc
gtcgattatatgtatcgtgacacactgacaatgcttaggccgaagatgcagttgttccaa
ggtttcaaagaggcccgttgtgctgtagatgaattgcgcaacaccttgtacccaagtctc
gccagaattgaagtaaaggaggacgaacagtattcaggtgaaccacgcgcatctgacagc
aataatgaatctgaagcaatgggagctataccagaggtcgatgaggaagtgacgacacct
acgccaatagcttcaggtaacggaagtggagatgccaaaggtatactcgcagaactgcac
ttcgatgaaagtgaagagtattctgaagcacagtcggaagatgactgggcaacagatggt
tacagagaaggtaatcatggtacacaggaaaatactcaaggggagttcagtctatcggca
ggcgtgagtgagggggttgttatggacccctcagaattagatgctgcgctaccaatggcg
ccaaggcgggttggctgcccagaagatgacgattttctttcggcccttgacaaaatggtg
tctgacaatatccaggaccggatgcgtgactcggtgaagccacaacaggttgatatatct
gtgccactccatgtcaagagcacaaaaaagacgtatgaacaattacgtgaaggaccgtcg
gacaatacgactgtggactttgtactcatgcttaggaaaggtaataagcagcagtataaa
aatcttgctgttcctgtgtcttccgaactcgctatgaatctcaggaatcgggaacaagaa
cagaaagaagaaaaggagagggtgaagagattgacactaaatattaccgaaagacaggag
gaagaggattatcaagagactataaatcaaggcactagacctgttaccgttaatctgaac
agagaacgtcgacaaaagtacaatcacccaaagggtgcgccggatgctgatcttattttt
gggcccaaaaaaattcgatga
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