Neodiprion virginianus: 124306405
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Entry
124306405 CDS
T09046
Name
(RefSeq) DNA-binding protein SMUBP-2-like isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
nvg
Neodiprion virginianus
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nvg03009
]
124306405
03012 Translation factors [BR:
nvg03012
]
124306405
Enzymes [BR:
nvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124306405
5.6.2.5 RNA 5'-3' helicase
124306405
Ribosome biogenesis [BR:
nvg03009
]
Eukaryotic type
Other ribosome biogenesis factors
124306405
Translation factors [BR:
nvg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124306405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
AAA_30
SMUBP-2_HCS1_1B
zf-AN1
ResIII
Viral_helicase1
DEAD
PIF1
AAA_22
Helicase_RecD
SLFN-g3_helicase
Flavi_DEAD
UvrD_C_2
T2SSE
nSTAND3
AAA_25
YqeC
AAA_31
AAA_18
AAA_6
DUF4537
Transp_Tc5_C
PhoU
cobW
TrwB_AAD_bind
AAA
ABC_tran
Piezo_TM25-28
IBR
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
124306405
NCBI-ProteinID:
XP_046623045
LinkDB
All DBs
Position
5:30916911..30922195
Genome browser
AA seq
926 aa
AA seq
DB search
MDYVISSFVRKHIDLLRSERDENLQHVFNNISAQALRNLEKEGDALTKLSVGSLASRGLK
QLQIDFVDPNNLPLKHAFAVGDLVACIQSNNRSQFLPGLVSAISQRTISVTISDQTVVNV
NEEEQFAIIKADSDYTYNCQTRALKNLESTETYSWRCFNVIRILFDNDEKIVQELIDMDN
EISEKYLNVDGQLKFINDKLAEDQRMAVSFALRKKFLAIIQGPPGTGKTTTLVELIGQLR
GLGKKVLVCAPTNVAVDNIAQKLCDAGIKPLRMGHPARIAKEVQSCSIDANVRQDNSYEI
LVQIKQSLKELQEKDGDTEKGGKPWGKIKELSKEYRERMDKLTSEIIRRHPVILCTLNSA
TTGKRAKTMRHVPREYFDVVVVDEASQALEASNWIAIPNAEKVVLAGDINQLPPAVMNQK
AAKNGLCVSLMERAIKKLGKKAYKSLEIQYRMNSKIMSWSSKQFYENTLKADKLVANHLL
RDLPGVESCSLTSDSLVFIDTCGCECEEYQIGSGTISKGNVGEAIVVDRLVAALVKSGVP
EREIGVITPYALQVDFVRKTLSTRSISAEVSTVDGFQGREKEVIVLSLVRSNEEKSLGFV
TDFRRLNVAVTRARRLLVVIVNSETVEDNKLITGLLKHIEDNGLLQTAQEYLEDNSEDLK
KDLEENVKVKQKSVVTNKTDSKTEKRKKPASKNGDKIKGDTNLKSVLKDKGIDLSINANR
KDYNLFECISESNSDIEDTELLPNTVEIATEDPEETDEALPSVEQVESKPKIELSNLIAS
LKQLETTSTQVSSAGTPLASNQPVPMQAKKNKKSKNRKPKNSEITADDDLDKLIATVTAN
DYICAMAGCKKSTQLMHVDCEFCKSRFCFTHGMQEIHGCGEAVRNKERKEFVRRKPENCK
KTDKDKFARKLKQLEEARKPKKKVEK
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggactatgtaatatcgagtttcgtcaggaaacatatagatttattgcgatcggaacgc
gacgagaatctccagcacgttttcaataacatatctgctcaagcccttcgtaacctcgaa
aaggaaggagatgcattgactaaattatccgttgggagtttggctagccgtggtttgaaa
cagctccaaattgacttcgtcgacccgaacaatctccccctgaagcatgcctttgccgtc
ggtgacttggtcgcctgcattcaatcgaataatcgcagccagtttctacctggtctcgtt
tcagccatctcacagagaaccatttcagtcaccatttcagatcaaactgttgtcaatgtc
aatgaggaggaacaattcgccatcatcaaagctgattccgattacacttacaattgccaa
accagagctttgaaaaatctggaatcaacggagacatattcctggcgatgtttcaatgtc
attagaattcttttcgacaatgatgagaagattgttcaggagctaatagatatggacaat
gaaatctctgaaaaatatttgaatgtggatggtcagctgaagtttatcaatgataaactt
gcagaggatcagcgcatggcagtatcatttgctttgcgtaaaaaatttcttgccattatt
caaggaccccctggcacaggaaagactaccactttagttgaattaatcggccaattgcgg
gggttgggtaaaaaggtattggtgtgcgctccaactaatgttgcggtggacaacattgcc
cagaaattatgtgatgctggcataaagccattgagaatgggccatccagctaggatagcc
aaggaggtacagagttgttcaatagatgccaacgtgcgccaagataactcctatgaaatt
ttagttcagataaaacagtcgttaaaagaattgcaagaaaaggacggagacactgagaag
ggtggaaagccatggggtaaaatcaaggaattgagcaaagagtaccgtgaacgaatggac
aagctaacttctgagataatcagacggcatcctgtcattctctgcactctgaactctgca
actactggaaaacgtgctaaaactatgcggcacgtgcccagagaatatttcgatgttgtt
gtagtggacgaagcttctcaggcgttggaggcctcgaattggattgcgattccaaatgcg
gagaaggttgtgcttgccggcgacattaaccagcttccgcctgctgttatgaaccaaaaa
gcagccaaaaacggactatgtgtgagcctcatggaaagggcgattaaaaaacttggaaag
aaggcttataagagtctcgaaattcagtacagaatgaatagcaaaatcatgtcgtggtct
agcaaacagttttatgaaaatactctcaaggcggacaaactcgttgcgaatcacttactc
agagacttgcctggagtggaatcatgttcgcttacaagtgattcgctagtgtttatcgac
acctgtggatgtgaatgcgaggagtatcaaatcggcagtgggacaatatcgaaaggaaac
gttggtgaagcgatcgtagttgaccgactagtagcggcactggtaaaatctggtgtcccg
gaacgagaaattggtgtaataacgccgtatgctctgcaggtagactttgtacgaaaaacg
ctgtcaactcgttctatatctgctgaagtttctacggttgatggctttcaaggtagagaa
aaggaagtgatcgtactatctttggtccggagtaatgaagaaaaatcactcggctttgtc
actgactttagacgtttaaacgtcgcggttacacgggcaagaagactgcttgtcgtcatc
gtgaacagcgaaactgttgaggataacaaattaattactggtcttttgaagcatattgaa
gataacggtctgttacaaacagcgcaggagtatttggaagataattcggaggacctcaag
aaagacttggaagaaaatgtaaaagtgaaacagaaatctgtggtgaccaataagacggat
agtaagacagaaaagagaaagaaaccagcatcgaaaaatggcgataaaattaaaggtgat
accaatttgaagagtgttctcaaagacaaaggaatcgatttgagtataaacgcaaatagg
aaagattataatctcttcgaatgtattagcgaaagtaattccgacattgaggacacagaa
ttacttccgaacacggtagaaatcgctacagaggacccagaagaaacggatgaagctttg
ccatccgttgaacaggtggaatcaaaacctaaaattgaattatccaatttgatcgcgagt
ttaaagcagctcgaaacaacttccacgcaagtttcctctgcaggtacgcctcttgcttca
aaccaacccgtgcctatgcaagctaagaagaataaaaaatctaaaaatcgtaagccgaaa
aattcggaaataacggcggacgatgatcttgataaattaatagcgacggtgacagccaat
gactacatttgcgcaatggcagggtgcaagaaatcgacccaattaatgcatgttgattgc
gaattctgtaaatctaggttctgctttacacacgggatgcaagaaattcacggttgtgga
gaagctgtgagaaacaaagaaaggaaagagtttgttcgtcggaagccagaaaactgtaag
aaaacggacaaagataaatttgcaagaaagttgaagcagctggaggaggctagaaaaccg
aaaaagaaggttgaaaaatag
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