Neodiprion virginianus: 124307701
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Entry
124307701 CDS
T09046
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
nvg
Neodiprion virginianus
Pathway
nvg03022
Basal transcription factors
nvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124307701
09124 Replication and repair
03420 Nucleotide excision repair
124307701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvg03021
]
124307701
03400 DNA repair and recombination proteins [BR:
nvg03400
]
124307701
Transcription machinery [BR:
nvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124307701
DNA repair and recombination proteins [BR:
nvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124307701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
124307701
NCBI-ProteinID:
XP_046625619
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All DBs
Position
6:9332346..9338804
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AA seq
561 aa
AA seq
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MTTSSEDVLMQVGQVRYKKGDGTLYVMNERIAWMLDNRDTVSVSHKYADIKLQKISPEGK
AKIQLQVVLHDGSSSTFHFVNRNGQEAQIKDRDDVKELLQQLLPKFKRKVNKELEEKNRM
LQENPTLLQLYRDLVITQVISSEEFWAQHAAEYTQAKKGQRQDIGVNGAFLADIKPQTDG
CNGLKYNLTVDIIECIFKTYPAVKKKHVENVPQKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKDIQSGISDPLVDISSFEDKSIDENYGTGSGKADKASGNIVHQSM
IKRFNQHSIMVLKASTANTSQDTSQLHLNGTTTLSTTKSEATNQIEDRAKAKKRRIQEKL
VYDDLDASCDLNAKTTAPLNLSHIDRYLHGPVPGSGSAEATNEELQVTLTQLRREASNWV
NGNHVPRHATTSLVSPAAAVSALGELTPGGALMKGFREDSLGQLIPKDLEKELRNMYMCT
CELLRHFWKSFPPNTPQLEEKAVRMHEALHRFHSARLKPFEDRVQREFSAVSQHLTSHLN
QLLNTAYRKFGVWQQRKLQMR
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgactacttcttccgaagatgttttgatgcaagtgggccaagttcgttataaaaagggc
gatggcactttgtatgtaatgaatgagaggatagcatggatgttggataacagggacact
gtttccgttagtcacaaatatgctgatattaaactacaaaaaatatcgccggagggtaaa
gcaaaaattcaactacaagttgtactccacgatggatcctcgtctacatttcactttgta
aatagaaatgggcaggaggcgcagatcaaggatcgggatgatgtcaaagaattgttacaa
caacttttacctaagtttaaaagaaaggtcaacaaggaattagaagaaaaaaatagaatg
ttgcaagaaaatccaaccttgctacagctctatcgtgatctcgtaatcacacaagttatt
tcctctgaggaattctgggctcaacacgcagctgagtacactcaagcaaagaaaggtcag
cgacaggatattggagtcaatggtgcttttttggctgacatcaagccgcaaacagacgga
tgtaatggtttgaaatacaatttaacggtagacataatcgaatgtatatttaaaacatat
cctgcggtgaaaaaaaagcatgtagaaaatgtcccgcaaaaaatgtcggagtctgatttt
tggacaaagttctttcaatcgcattatttccatcgagatcgtataaacgcagggaccaaa
gatcttttcaccgaatgtgccaaaatagatgatcaagagttgaaaaaagatattcaatcg
gggatcagtgacccattggttgatatttcttcatttgaagacaaatctattgatgaaaat
tatggcactgggtcgggaaaagctgataaagcctctggcaacattgtacaccaaagcatg
atcaaaaggtttaatcagcatagtataatggtgctgaaagcaagcaccgcaaatacttcg
caagatacgagtcaacttcatttaaatggaacaacaactttgtcaacaactaaatcggaa
gctaccaaccagatcgaagatcgtgccaaagccaaaaaacgtaggatacaagagaaatta
gtatacgatgatcttgatgccagctgtgatctaaacgcaaagaccacagctcccctcaac
ctgtctcacattgacagatatttacatggaccagtaccgggtagcggaagtgcagaagcc
accaacgaagagcttcaagtcaccttaacgcaactcagaagagaagcgagcaattgggtg
aatgggaaccatgtaccgagacatgcaacaacctctttagttagtccagcagctgcagta
tctgctttgggagaacttacgcctggtggtgctcttatgaaaggttttcgagaggatagt
ttaggacaattaattccgaaagatttggaaaaagaattacgtaatatgtacatgtgtacg
tgcgaattattaaggcatttttggaagagttttccaccgaacactccccagctcgaggag
aaggctgttcgtatgcatgaggctcttcacagatttcattctgcgaggctgaagccattt
gaggatcgtgttcaaagggagttttcggcagtcagtcaacacttgactagtcacctgaac
cagctcttgaacactgcctatagaaaattcggagtttggcaacaaagaaaattacaaatg
aggtag
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