Neodiprion virginianus: 124309234
Help
Entry
124309234 CDS
T09046
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
nvg
Neodiprion virginianus
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvg03021
]
124309234
Transcription machinery [BR:
nvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
124309234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
TOR1L1_N
HEAT_2
HEAT_EF3_N
TPR_Trm732_C
CEP104-like_TOG
HEAT_EZ
HEAT_ECM29
RIX1
Motif
Other DBs
NCBI-GeneID:
124309234
NCBI-ProteinID:
XP_046628618
LinkDB
All DBs
Position
7:complement(5625516..5642991)
Genome browser
AA seq
1925 aa
AA seq
DB search
MTSRLDRLFVLLETGSSAITRRAAAQQLGEAQRLHPHELHHLLARVSTLLKSPQWDTRVA
AAHAVQAILAQVPQWDPKPLHLNVPDAQLQQDETEDGQVRQFSKVNRLSLRDFDMARVLA
RSLHLTGSEGSEYDLVVAETSEPPNPQQTEKMFAAKFGLHPRLMGIDTNELFTNDDFAPS
VQTPGASQTKMPIDETMCQPSGLSRREMNRARRKARQSISKQRSREPDDTQDHQSSVTIG
SGEPYVKRPKQEENATSEASWSGDEGGNWGVPDGTGCWPDTAVEWPLDSFAESLCQDLFS
QKWEVRHGAATALRELVRLHGKGAGKSRDQTKEEMEESHRRWVEDAALRLLCVLGLDRFG
DFVSDQVVAPVRETCAQALGSLLLLMPCTDNSKNRENRQKTIKVEVKTEEDNDKIKEGGA
LGVLSVVLKLLEHNEWEARHGALLALKYLLAVRDDLLDELLPRAFPAAMHGLADPVDDVG
AAAASALIPVAGVLPKLLTPSQLEAVVLRLWELLREQDDLAAACNSFMGLLAAILSLPAA
REHLTPQPLSKVLPRLWPFLGHSSSSVRKATLQTLLTLTGDDGNPKDEQDRWGDAGGSVL
QEALRQVFQRALVEHVAAIQEVAERVWQNLVVRSDLQLLLHASCPLVSTWLCLAMQPEHV
PFSPALLVTATTTQHSSRATKSCGGNGSDAQSDSSSSGGCGSGGKSASELKVYIGGVETV
APATRRSNVVRARCMAARMLGLLSCYVVRPAPGVIYTADTPSPAVCYAKVLLVHLASRSA
LQRTVAGLTMAHWATLEQPHPPTIPDILKEKLLGCLSECVYYDEIAVTFTRLLQETRDYI
ATLKHYKLPLKEGTGLDASAISTGVMTLEQITILTGKTVSSLLNLGTAAGSGNTAVKLKP
KVLDSLEERRRAIESGATATAMQQHALNITSMAALAGAATMLRCLPGADCPLNPLVKPLM
ESIKREENDELQSLAARHLAHLIDLCVERKPSPNHKIASNLCMFLCSDPEFTPRIVGDSQ
PFEGILTLTNRHRHAERVAYNRGGFGGNGGRGPGRPPTTEIPLEELLAYEEPEAKAAKTR
RRGATLALTSVTKLLGAQLSSRLPRLWELMLPAALKNSGPDECSYQQDHQEEATQLVSSL
QVLETVASSLDASLLPPAIACVPRLCNLLAHPYRAVRHMAARCIAVLGTLRTEEVMRQVV
RSVIPLLEPSIEKDSSSTDKVKIVAPAEIDAKRQGAAESLACLVESLGVGIVPYAVLLVV
PLLGRMSDQNQAVRLTCSATFATLVQLMPLDPGAIGDPPLLGDEKAQERHFLEQLLNPRS
IPDTKLPVPVSAELRAYQHQGLNWLAFLNRYRLHGVLCDDMGLGKTLQTLCMLATDHYHH
PQTFPSLVVCPPTLTGHWVYEAEKFFKPKDLSALQYAGPPPEREKLRPRVSRYRLVVASY
DIVRKDIEFFESIQWNYCILDEGHIIKNGKTKSAKAAKRLRAHHRLILSGTPVQNDVLEL
WSLFDFLMPGFLGSEKQFAARYSRPILASREPKAGAKDQEAGALAMEALHRQVLPFLLRR
NKEDVLQDLPPKITQDYYCDLSPLQRTLYEDFRTRHSATLTSPAPANNSLGTHVFQALRY
LRNVCNHPKLVLTPRHPQYHYVCASLKHQQSSLTDIEHGAKLPALKQLLLDCGIGQQQQQ
PVSMTAITTTDGQQQQLVSQHRALIFCQLKAMLDIVEKDLLRVHLPTVTYLRLDGSVPAS
QRHSVVARFNADPSIDVLLLTTQVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIG
QKKVVNVYRLITRATLEEKIMGLQKFKLLTANTVITTENASMETMGTDQLLDLFSLDTSK
DKRMDGQGGSGSVDGSESGFSGIVGVGRSVLESLPDLWEQQQYDDEYDLESFLSTLRGDN
QPSPV
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacggttggatcgactttttgtacttttggaaactggatctagtgccataact
agaagagccgcagctcaacagcttggcgaggcccaacggctgcatccgcatgaactgcat
catcttttagccagagtttctacattattgaagtcacctcagtgggatacgagggtagcc
gctgcccacgccgttcaagcaatacttgcccaagttccacaatgggacccgaaaccccta
cacctaaatgtgcctgacgcccaactgcaacaagatgaaaccgaggatgggcaagtacgt
cagttcagtaaagtcaacagactcagcttgcgagattttgatatggcaagagtgttggca
cgtagtttacatttaaccggatctgagggtagcgagtacgacttagttgtagctgagaca
agtgagccgcccaacccgcagcaaacagaaaaaatgtttgccgcaaaattcggtctccat
cctcgacttatgggcatcgataccaatgaattattcacgaatgacgattttgcaccatcg
gtgcaaacgcctggtgcgtcgcaaacaaaaatgcccattgacgagacaatgtgccaaccc
agtggtcttagccgtcgagaaatgaatcgtgcacggcgtaaggcacgtcagtcaatttca
aagcaacgttccagggagcctgacgatacgcaagatcaccaaagttcggtaacaatcggc
agtggcgaaccatatgttaaaaggccaaaacaagaagaaaacgcaacgtctgaagcatcg
tggagtggcgatgagggaggaaactggggagtcccagacggaaccggatgttggcctgac
actgctgtcgagtggccgctcgattcattcgcggagagtctttgtcaggacctgttcagc
cagaaatgggaagttcgtcatggtgctgcgacagcgttgcgtgaacttgttcggctacat
ggaaaaggtgccggcaagtcacgagatcaaacaaaagaagagatggaagaaagtcaccgt
cgatgggtagaagacgctgcgttgcgactgctttgcgttttgggtctggacagatttggt
gactttgtctcagatcaagtcgtagctccggttcgtgagacttgcgctcaggcacttggt
tccctattattgttaatgccatgtaccgacaattcaaaaaaccgtgaaaataggcagaaa
acaataaaggtggaggtcaaaacggaagaagataatgacaaaattaaggagggcggagca
ttgggggttttgtccgttgtcctgaaattactcgaacataacgagtgggaagccagacac
ggtgcccttttggcactaaaatatttactcgctgttcgagatgatcttctcgatgaactg
ctaccaagggcatttccagcagccatgcacgggctcgccgatccagtggacgacgttggt
gctgcggcggcaagtgctttgattccggtagctggcgtcttgcccaaacttctcacaccg
tcgcaacttgaagctgttgttctgcggctttgggagctgctgcgtgaacaggacgatctg
gccgctgcctgcaacagcttcatgggtctactcgctgcgattttgtctttacctgctgcc
cgtgaacatcttacgccgcaacctttatccaaggttttaccaaggttgtggccgttctta
ggtcactcaagttcgagcgtgagaaaagccacgttacagacgctgcttacacttacggga
gatgatggaaatccgaaagatgagcaggatcggtggggggacgccggtggcagcgttttg
caggaagctttgcgtcaggtgtttcagcgcgcattagttgaacacgtggctgctatacaa
gaagtggcggagcgagtgtggcagaatctcgtcgtacggagtgaccttcagttgctgttg
cacgcttcctgtcctctcgttagcacgtggctttgtcttgccatgcaaccagagcacgta
ccgtttagtcccgctctgctggtgaccgctacaacaactcagcatagctcaagagcgaca
aaaagttgcggtggtaacggaagcgacgctcaatccgattcgagcagtagcggtggttgc
ggaagtggcggcaagtcagcgtcggagttgaaggtctacataggtggtgtagaaactgta
gctccagcaacacgtcgatctaatgttgttcgtgcacgttgtatggcagcaagaatgctt
ggcctactttcgtgctatgtagtccgccctgctccaggggtaatttacacggcagataca
ccgagtcctgcagtttgctacgcaaaagttctgctggtccatttagcctcacgatccgcc
ctgcaacgcacggtcgcgggactcacaatggcccattgggcaaccttagaacaaccccat
ccgccgacgatacctgatattctcaaggagaagctcttgggctgtctgagtgagtgcgtt
tactacgatgagattgctgtgaccttcactcgtttgctacaagagacgcgtgactatatc
gctactttaaagcactacaagttaccgctcaaggaaggaaccggtctcgatgcatcagca
ataagtacaggggtgatgactcttgagcaaatcactatacttacggggaaaactgtttcg
agcctgttaaacttaggaactgctgctgggagcggcaataccgcagtgaaattgaaaccc
aaagtgttggacagtttagaggaacgaagacgtgccatagaatcaggtgctactgcaact
gcgatgcaacagcatgcgctcaatataacatccatggcagcgctcgcaggggctgcgaca
atgctgcgctgtcttccgggcgcagattgccccctgaaccctctcgtaaagccgctcatg
gaatcgataaagcgggaagaaaatgatgaattgcaaagtcttgctgcacgccatctcgca
cacctcatagatctctgcgtggaaaggaaaccctctccaaatcacaaaattgcttcaaac
ttgtgtatgtttctttgctcggatccggagtttacaccacggatagtaggggacagtcag
ccatttgagggtattctcacattgacgaacagacatcgacacgcagaaagagttgcttac
aatcgtggtggttttgggggtaacggaggtcgcggtcctgggagaccaccgacaacggaa
atacctctcgaagagctactggcatatgaagaaccggaagcgaaggcggcgaaaactcgt
cgccgtggtgcaaccttggcgcttacttccgtaacaaagctgcttggagcccagctatct
tcgcgtctaccacgtctctgggaattgatgttaccagcggctctcaaaaactctggtccc
gacgaatgttcctatcagcaagaccatcaggaagaagcgactcaattggtgtccagtctt
caagtactggaaacagtcgcctcaagtcttgacgcgtcccttttaccgcccgcgattgca
tgtgtaccacgactttgcaatcttttggcacacccttacagagctgtcagacacatggct
gcccgttgcattgctgtattaggcactctgcgcactgaagaggtaatgaggcaggtagtt
cgaagcgtaataccactcttagagccgagtattgagaaagacagttcaagtacggataaa
gtcaagatagtagcccctgctgaaatagatgctaaacgtcaaggagcagccgaatcactc
gcttgtttggtggagagcttaggcgtagggattgttccatatgctgttcttctcgttgta
cctttacttgggcgaatgagtgatcaaaatcaagctgtacgcctcacctgcagcgcaacc
tttgcgactcttgttcaactcatgccactcgatcctggagcaattggagatccaccccta
cttggtgatgaaaaagctcaagaaagacattttctggaacaactactaaatccacgaagc
attcctgatactaaattgccggtcccagtgtcggctgaactacgtgcttatcaacaccag
ggattaaattggcttgcctttttgaaccgttaccggctccatggagttttgtgcgacgac
atgggtctcggaaagactttgcagacattgtgcatgttggccaccgatcactatcatcat
ccgcaaacatttccgagtctcgttgtttgcccgcctactttgactggccactgggtttac
gaggctgaaaaattcttcaaaccaaaggatctgtcagccttgcaatacgccggaccacca
ccggaacgtgaaaagttacgtccacgggtatctcggtaccggttagttgtcgccagctac
gatatcgtaaggaaagatattgaatttttcgaatccattcaatggaattattgtatactc
gacgagggacatattattaaaaatgggaaaacaaaaagtgcgaaagctgccaaacggctc
agggcacatcatcgtctgatactctccggcacaccggtgcaaaatgatgtcctcgagtta
tggtctcttttcgactttctcatgcctggattccttggtagtgagaaacagtttgcagca
cgttattcacgacctatattagctagtcgagaaccgaaagcaggagcaaaagatcaggaa
gcaggcgcgttggctatggaagcactccatcgtcaggtgttaccttttttactgaggcgc
aacaaagaggacgtattgcaagacctacctccgaaaattactcaggattactactgcgac
ctgtccccgctacaacgtactctctacgaagatttccgtacccgacattcggcgactctc
accagcccagcgccggccaataattcattgggtacacacgttttccaggctctacgttat
ctccgaaatgtctgcaatcatccaaaattagtgcttaccccgcggcatccgcaatatcat
tacgtatgcgcttcacttaagcatcaacagagttctctcaccgacattgaacatggtgcc
aaacttcccgcactgaagcaactcttgctagattgcggtatcggtcagcaacagcagcaa
ccagtctcaatgactgctataacgacgactgatggccagcagcaacaattggtcagccag
catcgagccctgatcttctgccagctaaaagctatgctggatatcgtggaaaaagacttg
ctgcgagttcatttacccacagttacctatttacgtcttgacggaagcgtaccggcgtca
caacgccattctgttgttgcccgtttcaacgccgatccgtcgatcgacgttttactgtta
actactcaagtcggcggtttgggattgaatctaaccggagcagatacagtgatattcgtt
gagcacgactggaatccaatgaaagatctacaggcaatggatcgagcgcatcgtatcggc
cagaagaaagttgtcaatgtttatcgattgattacgagggcaacactcgaagaaaagatc
atgggattgcaaaagttcaaacttctcactgccaacactgtcatcacgacggaaaacgca
tctatggagaccatgggaacagatcagttactggacctgttctcgttggacactagcaag
gataaaaggatggatggacagggaggttctggtagtgttgatggaagtgagtctggattt
tctggcatcgttggagttggtcgatctgtgttagaaagtctcccagatctttgggagcag
caacagtacgatgacgaatacgatcttgagtctttcctttcaacgctacgtggtgataat
caaccaagtcctgtttag
DBGET
integrated database retrieval system
