Neodiprion virginianus: 124309635
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Entry
124309635 CDS
T09046
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
nvg
Neodiprion virginianus
Pathway
nvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124309635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nvg03400
]
124309635
DNA repair and recombination proteins [BR:
nvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124309635
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
124309635
NCBI-ProteinID:
XP_046629416
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Position
7:complement(17935976..17950454)
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AA seq
922 aa
AA seq
DB search
MAVQPNQQFNMDNATQQSFIRFFKNLPEKPSSTIRFFNRTEYYTLHGSDALFAAKEIYKS
TAGCKMLGAEPYKTEGLILSKSNFENFVRDLLLVKQYRVEVFVNQGSGKNQDWILEYKGS
PGNLVQFEDILFSNNDVAVSTSVMAVKLGGEAKNRIVGVSCVDSVERLIAVCEFADDDLF
SNLEALVISFGPKECLIIQGDGSQEFQTLKQLMERSNIMVTLRKKSDFSTDSIVQDMNTL
LNFKKGQQRNAQTLVEMNLKVAMAGTSAIIKYLELTSDEGNFNQFKVKQLEQSRFVRLDA
AAVRALSIEPRCDLPSGTSTGAPNSILNLLDRCRTPQGHRLISQWIRQPLRDIALIKERH
DIVETLVKDNELRSSLMEDHLRRVPDLQQLAKKLAKKKVTLQDCCRIYFCVSHLPVLTEQ
LCNAKYGAAMKAMIVDPLRELISDMDKYQQMIEQTIDLEAAEKGDYMVKPEFNNDLQELK
LKMNDLEEEIQGLINKVATDLSLEAGKVLKLESNQQFGYYFRITLKEEKSIRNKKGYTTI
DSNKSGVRFTNQKLTSLNEDFISVRDQYLEEQKSVISEIINIAAGYTGPVHSIGSVTAQL
DVLTAFALASANAPRAYVRPEMCSSDVGELNLIQARHPCLELQEGVDFIANDVSFKRDEC
TFHIITGPNMGGKSTYIRTTGVVALLAHIGCFVPCDSAKISILDCILARVGADDSQTKGL
STFMTEMIETAAILRTATSNSLVIIDELGRGTSTYEGCGIAWSIADHLATELKPYCLFAT
HFHEITRLAEDVPTVKNLQVTAVVGDNKLTLLYRVKPGVCDQSFGIHVAKMANFPDDVVE
AAEKKLIELEDCQKITFEGSDDPAARRKIIKAGDELIANFAAKCKALDPSLTKPEIENKI
QLYKEEILSHNNPYINALLSSP
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcaaccaaatcaacagttcaacatggacaatgcgacgcaacagagctttatc
agattctttaaaaatcttcctgaaaaaccatctagtacgatacgatttttcaacaggaca
gaatactatacgctacatggaagcgacgccttgttcgcggctaaggagatctacaaaagt
acagctggctgcaagatgctcggtgctgagccatacaaaacggaaggattgatcctaagc
aagtccaactttgaaaattttgttcgtgatttgttgctggttaaacagtacagagtggaa
gtgtttgttaatcaaggatcaggaaagaatcaggattggattctagaatacaaaggatct
ccaggaaatttagttcaatttgaggatattctattcagcaataatgatgtcgcagtcagt
acctcggttatggctgtgaaacttggtggtgaggcaaaaaacaggatagtcggagtgagt
tgcgtagattcagttgagcgtttaattgctgtttgcgaatttgccgacgacgatttgttc
tcaaacctagaagcgcttgtgatttcctttggaccaaaagaatgcttaataattcaaggg
gatggcagtcaagagtttcaaactttgaaacagttaatggaacgaagtaacatcatggtc
acgctaagaaagaagagtgatttttcaacggattcaattgttcaagacatgaacacgctt
ctgaacttcaagaaaggccagcaaagaaatgcccagacacttgtggaaatgaatttaaaa
gtggctatggcaggaacatcagcgattatcaaatatcttgagttgacatcggacgaagga
aatttcaatcagttcaaggtaaaacaattagaacagtctagattcgtcagattagatgca
gcagcagtgagagcgctgagcatcgaaccacgctgcgatcttccttctgggacaagtaca
ggcgctccgaatagcatactgaatctgttggatcgatgcagaaccccacaaggacacaga
ttgatatctcagtggattagacaaccgctgcgagacattgcgttgatcaaagaacgacat
gacattgttgaaactttggtaaaagacaacgaattgaggtcctctctgatggaagatcat
ctgagacgcgtacccgatcttcagcagcttgcaaaaaagttggccaaaaagaaagtcact
ctacaggattgttgcagaatttacttttgtgtctcgcacttgccagtactcaccgagcaa
ttgtgtaatgcaaaatatggcgcggcgatgaaggcaatgatagtagatccactcagagag
cttatttctgatatggataagtatcaacaaatgatagaacaaactattgatttggaagct
gcagagaagggtgattacatggtgaaaccagaatttaataacgatttgcaagagcttaag
ctgaaaatgaatgatttggaggaagaaatacaaggcctgatcaacaaagttgccacagac
ttgtctcttgaagctggaaaagttctcaaactggaatcgaatcaacagttcggatattat
tttcgaataacgttgaaagaagaaaagtctatcaggaacaagaaaggctacacaactata
gattcaaacaaaagcggtgtgaggtttacaaaccagaaactgacgtctcttaatgaagac
ttcataagcgtcagggatcagtatttggaagaacaaaaatctgtcatttcagaaatcatc
aacatcgcagctggatatactggaccagttcattccatcggttctgtgacggctcagctc
gacgtacttacagcttttgcattagcttcagctaatgctccgagagcttatgttagacca
gaaatgtgttccagtgatgttggcgagttaaatctcattcaggcaagacatccttgccta
gaacttcaggaaggggtggatttcatcgcaaacgatgttagcttcaaaagagacgaatgc
acctttcacataataactgggccaaatatgggcggaaaaagtacgtacattcgaacaaca
ggagttgtcgctctgctagctcacattggctgttttgtgccttgtgatagtgcaaaaatt
tcaatacttgattgtattttggcgagagtcggagccgatgattctcaaactaaaggactt
tctaccttcatgactgagatgattgaaacagcggctattttaaggaccgcaacgtctaac
tctcttgtcataatcgacgaacttggtagaggaacttccacgtatgagggctgtggaata
gcttggtctatagccgatcatttggccacagaactcaaaccttactgtctcttcgctact
catttccatgaaataacgaggctagcagaagatgtaccaacagtaaagaatctccaagta
actgcagttgtcggagacaacaagctcactttactgtatcgcgttaaaccaggtgtttgc
gaccaaagtttcggaatacacgttgctaaaatggcaaactttccagacgatgttgtggag
gccgctgaaaaaaaactgattgaattggaagattgtcaaaaaataacttttgaaggctcg
gatgatccagcagctagaagaaaaattataaaagctggagacgagctgatcgcaaatttt
gcagccaaatgcaaagcactcgatccatcattaacgaagccagaaattgaaaacaaaatt
cagttatacaaagaagagattctttctcacaacaatccttatataaatgcactgttgtcg
agtccgtga
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