Nasonia vitripennis (jewel wasp): 100120483
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Entry
100120483 CDS
T01081
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nvi
Nasonia vitripennis (jewel wasp)
Pathway
nvi03013
Nucleocytoplasmic transport
nvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nvi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100120483
03015 mRNA surveillance pathway
100120483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvi03019
]
100120483
Enzymes [BR:
nvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100120483
5.6.2.5 RNA 5'-3' helicase
100120483
Messenger RNA biogenesis [BR:
nvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100120483
mRNA cycle factors
Common to processing body (P body) and stress granule
100120483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
100120483
NCBI-ProteinID:
XP_003426577
NASONIABASE:
NV10683
UniProt:
A0A7M7GE33
LinkDB
All DBs
Position
5:26554770..26561869
Genome browser
AA seq
1127 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQASQQT
QPVQINGTVGTSALDLKISGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVV
MCNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETILECYSCAVRNVFVLG
FIPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLSWLVKIPSEQEQLRAR
QISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEAD
YDKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWS
GIGHVIKIPDNYGEEVGIELKNNSGAPTECTSNFVVDFIWKSTSFDRMQLALRKFAVDDT
SVSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPG
TGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSP
VSFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICC
TCVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKA
ARAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKI
DFPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITP
YEGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLND
PRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAK
PKKLVNAANPGSHFMSTSMYDAREAIIPGSVYDRSGAQVNGTQTHNPYYQRNVPIDIFSR
THDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQQNQRVRRGGVN
MKGNNKVGGGGGARLGKLSQSEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAEL
SQDSFAVGEFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcatacgggccgagcagccagacgctcaccttcctggacaccgaggag
gcagacctcatcggcgccgacacccagggttccgagttcgacttcaccgactttacccta
ccctcgcccagtcagacccaggcttcgcagcacgatgccgcgcaagctagccagcagacg
cagcccgttcagattaatggcacggttgggacatcagcactagacctcaagatctctgga
gcagctcaaagtttagccgaactacagtttgaagaggaagaagaggaagcttactataat
cgcgatttacctgatcatgcttgtaaatattgtggtattcatgaagcatcctgtgttgtt
atgtgcaatgtctgccgcaagtggttttgtaatggcagaggcaacacatctggatctcac
atcatcaatcacctagttcgtgccaagcacaaggaagtaactttgcacagggatggacca
ctgggtgaaaccatattagaatgttactcgtgtgcagtgagaaatgtctttgtacttggt
tttataccagcaaaagctgattctgttgttgtacttttatgtcgtcaaccatgtgctgca
caaagctcgctgaaagatatgaattgggatcaggagcagtggaaacctctgatagaggat
cgcagttttctgtcgtggcttgtaaagatcccttcagagcaagaacagctgcgcgctcgc
cagatctcggcacaacaaataaacaaactggaagaactgtggcgcgataacgtcgacgcc
acttttcaagacttggaaaaacccggcgttgatgaagaaccccaacaagtcttgttgcgc
tatgaagatggttatcaataccagaacatctttgggccactggtcaaactggaagcagat
tacgacaagagattgaaagaatcacagacccaagagaatatcgaggttcgatgggacgtg
ggtctgaacaagaagaccattgcgtactttatgctagctaaaactgacggagatatgaag
ctgatgcacggagacgagttgagactgagatatcttggagaactgcacaaaccttggtcg
ggcatcggacacgttattaaaattccagacaactatggtgaggaagtagggatcgagctc
aaaaacaactcgggcgcgccaactgaatgtacgagcaatttcgtggtggacttcatctgg
aaaagtaccagcttcgacaggatgcaattagcgcttcgcaagtttgcagtggatgacaca
tccgtctcggcctacatctaccaccgacttttgggtcacgaagtcgaggaggtcctcttc
cgctgccacttgcccaaacactttagcgcgccgaacttgccggatctcaatcgctcgcaa
gtctacgcggtaaagcatgcgattcagcgaccgctgtcactgattcagggtccgccgggt
acgggcaagactgtcactagtgccacgattgtttaccagttggtcaagcagaacggaggt
cctgtcctagtgtgcgcaccatccaacaccgctgttgatcagttgacggagaaaattcat
aaaagcaatttaaaggtcgtgagattgtgtgccaagtccagggaggccattgactcgcct
gttagcttcctagcgcttcacaatcagatcaagaacatggagactaacacggagctgcag
aagcttcaacagctgaaggacgagactggagaactgtcaagtgttgatgaaaagagatac
agacttttgaagaaagctgccgagaaggaattactagaagcagcggatgtcatttgctgc
acatgtgtgggagcgggcgatccacgtctgcaccgactcaaattccactcaatcttgatt
gacgagagtatgcaggcaacggagccagagtgtatggtgccagtagttctaggtgccaag
cagctcatcctcgtaggcgatcactgccagctcggacctgttgtcatgtgcaagaaagcg
gcgcgcgccggactttctcagtcgctgttcgagcgtctagtagtactcggcatcaggccg
ttcaggcttgaggtccagtatcgtatgcaccctgatttatctaggttcccatccaacttc
ttctacgaaggttcgctgcagaacggcgtctgtgcggatgagcgcaagctcctgaaaatc
gacttcccttggcctgcgccagataagcccatgttcttctacgtgacgcagggtcaggaa
gaaattgcaggcagtggtacctcctacctcaaccgtaccgaggcctctaatgtcgagaaa
atcacaactcgcttcttgcgatgcggtgtcaaacctgagcagatcggcgtaattacacct
tatgaaggccagcgcgcctatctcgtccaatatatgcagtatcagggttcgctgcactcc
aagctttatcaagaaatcgaagtggccagtgttgacgccttccagggaagagagaaggat
atcatcattatgtcgtgtgttagatccaacgagcatcagggcattggtttcttgaacgat
ccgagacgattaaacgtcgcactaacgagagccaagtatggaattatcatagtagggaat
cctaaggtactgtccaagcagccattgtggaaccacttattaagtttctacaaagagcaa
aaagtcttggtcgaaggtccgctgaacaatctcaaggaatcgatgattcaattcgccaaa
ccaaagaaacttgtaaacgctgccaacccgggatcgcacttcatgtcgacgtcgatgtac
gacgcaagagaagctataattcctggatctgtttacgacagatcaggcgctcaggtgaac
ggaacgcaaacgcacaatccgtactaccagcgcaatgtgccgattgacatcttcagtcgc
acccacgatactattagctacatcagtcccgagagagcacaagctgctatgaacaatgta
cccgtccctgtgggcatgttcatgaatatggcgcatgtgccgccgaggttctacaatcaa
catcaacaggcgttacaagctcggcagcagaatcagcgagttcgacgtggtggcgttaac
atgaagggcaataataaagttggcggcggcggaggcgcacgcctgggtaaactcagtcag
tcagagcagaatacacagccctatagtcaaccgggtcttccgctcacacagggcaccact
cagggcatgtcacagcctggttttagtctttcgcagccgggactgtcccaagcagagttg
tcgcaggactcgtttgccgttggcgagttccagtctcagatggatggacttttgtcacag
gactcaacttatcagggagaccgaagcggtttttatcaatccggtcaatcacaagccggg
ggccagttctcccagccatactga
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