Nicrophorus vespilloides (burying beetle): 108556352
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Entry
108556352 CDS
T04922
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nvl
Nicrophorus vespilloides (burying beetle)
Pathway
nvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108556352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvl03019
]
108556352
03041 Spliceosome [BR:
nvl03041
]
108556352
Messenger RNA biogenesis [BR:
nvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108556352
Spliceosome [BR:
nvl03041
]
Complex B
Other components
Prp19-related factors
108556352
Complex C
108556352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_15
Mad3_BUB1_I
TPR_2
TPR_10
TPR_12
ARM_TT21_C
NRDE-2
TPR_7
TFIIA
PPR
ARM_TT21
FAM171A1-2-B_C
Motif
Other DBs
NCBI-GeneID:
108556352
NCBI-ProteinID:
XP_017767919
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MKMPVCEEPMEIIFTDDDLPYEEEILRNPYSVKHWLRYIDHKKSASKEAINIIYERSLKE
LPGSYKLWYNYLKLRRKQIKTRCVIDPAYESVNNAFERSLVFMHKMPRIWMDYCTFLTDQ
CKITRTRKVFDRALRALPITQHHRIWPLYLKFVQKHDIPETAVRIFRRYLKLCPENAEQY
VEYLTKINRLDESAQTLAKIVNNEHFVSQEGKSNHQLWNELCELISKNPRKVRSLNVDAI
IRGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDAYAQFE
EISLNKRNEEICKIKNPTEEDEVDLELRLARFENLMERRLLLLNSVLLRQNPHNVQEWHN
RVKLYEGNPHEIINTYTEAVQTVKAKLAVGKLHTLWVEFAKFYETNKQIEDARLIFEKGT
QVEYLKVDDLAAVWCEWTEMEIRSENYEGALKLMHKATVIPSRKVHYHDDKETVQARLYK
SLKVWSLYADLEESFGTFKSCKAVYDRIIDLRIATPQIIINYGLFLEENNYFEEAFRAYE
KGISLFKWPNVYDIWNTYLHKFLKRYGGTKLERARDLFEQCLENCPAKFVKPLYLLYAKL
EEEHGMARHAMAVYERATGAVLPEEMFEIFNIYIKRAAEIYGVPKTRQIYEKAIEVLQED
KTREMCLRFSEMETKLGEIDRARAIYAHCSQICDPRVTAEFWQVWKEFEVRHGNEDTMRE
MLRIKRSVQAMYNTQVNMMSAQMLNTAGSTGTVADLAPGVKDGMRLLEAKAVEMSGVKGG
NIMFVRGETQGESRGEKERVTNPDEINIDDDDEDDDDDAEDDDDDNVPITKQAIPSEVFC
GLKPDDEDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgcctgtttgtgaggagccaatggaaatcatttttactgatgatgatcttcca
tatgaagaagaaatattaaggaatccctattcagtgaagcattggcttcgctacattgat
cataagaagagtgcttccaaagaagctataaatatcatatatgagagatcattgaaggaa
ttgcctggttcatataaattatggtacaattatttgaaacttcgtcgaaagcaaattaag
acaaggtgtgtaatagatccagcatacgagtctgtaaataatgcgtttgagagatcttta
gtgtttatgcataagatgcccagaatttggatggattattgtacatttttaactgatcaa
tgtaaaattacacgtacgagaaaagtgtttgatagggctctacgggcgcttccaataaca
cagcaccatagaatatggccattgtatttgaagttcgtacaaaaacatgacattcctgaa
acagcggttagaatatttaggaggtatttgaaattgtgccctgaaaatgctgaacaatat
gtggaatacctgacaaagataaatagattggatgaatcagctcaaacattagccaagata
gttaacaatgaacattttgtatctcaagaaggtaaatccaatcatcaactgtggaatgaa
ctgtgcgaattgatttcaaagaatccgcgtaaagtaagatccttgaatgtagatgccatt
attagaggtgggctaaggagatacactgatcaattgggacatttatggaattctttagca
gattattatgttagaagtggtttatttgatagagcaagagacatatacgaagaagcaatc
cagacagttacaacagttagagattttactcaagtatttgatgcgtatgcacaatttgaa
gagataagtttaaacaagagaaatgaggaaatttgtaaaatcaagaatccaactgaagaa
gatgaagtagatttggaattgagattggccagatttgagaacttaatggagaggagactt
ttattgttgaattctgtgttgcttaggcagaacccacacaatgtgcaggaatggcacaac
agagtgaaattgtatgaaggaaatccgcatgaaattattaatacgtacacggaagctgtc
caaactgttaaagcgaaattggcagttggtaaattgcacacgttgtgggtggaatttgca
aaattttatgaaaccaataaacagatagaagatgcgcgcttgatttttgaaaagggcact
caagtggagtatctgaaagttgatgatttagctgctgtttggtgtgaatggactgaaatg
gaaatcagaagtgaaaattatgaaggcgctctgaaattaatgcacaaagccacagttatt
ccttcacgtaaagttcactatcacgacgacaaagaaactgtgcaagcaaggttatacaag
tctctcaaagtttggtctctctatgctgatttagaagaaagctttggaacatttaaatct
tgtaaagcggtgtacgatagaatcatcgatttgaggatcgccacacctcaaattatcatt
aattatggtcttttccttgaagaaaataattactttgaagaggctttcagggcatacgaa
aaaggaatatcgttgttcaaatggccaaatgtatatgacatttggaacacgtatttgcat
aagtttttgaaacgatatggcggaacgaaactggagagagccagggatttgttcgaacag
tgtttggagaattgccccgccaaattcgttaaacctttatatctgttgtacgcgaaattg
gaagaggagcatggaatggcgagacacgctatggccgtttacgaaagggcaacaggcgcc
gtccttccagaagaaatgtttgaaatcttcaatatttacataaaacgtgctgccgaaatt
tacggcgttccaaagacaagacaaatttatgagaaagccatcgaagttctgcaagaagat
aagacgagggagatgtgcttgaggttttcggaaatggaaacgaaattgggtgaaatcgat
cgcgcgagagcgatttacgcgcattgcagtcaaatatgcgaccctcgcgttaccgccgaa
ttttggcaggtctggaaagagtttgaagtgcggcatggaaatgaagacactatgagagaa
atgttgaggatcaaacgtagtgtacaagccatgtacaatactcaagtaaatatgatgtct
gcacaaatgttgaatacggctggaagtacgggcactgtcgctgatttagcaccaggtgta
aaggatggaatgagactgttggaggcgaaagcagttgaaatgtctggcgttaaaggtgga
aatattatgttcgtcagaggggagacgcaaggagagagcagaggagaaaaggaaagagtt
actaatcctgatgaaattaatatcgatgatgatgatgaagacgacgacgatgatgcagaa
gatgatgatgatgataatgtccccattaccaaacaggcaataccaagtgaggtgttctgc
ggtttaaaacccgacgatgaagatgattaa
DBGET
integrated database retrieval system
