Nicrophorus vespilloides (burying beetle): 108557166
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Entry
108557166 CDS
T04922
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
nvl
Nicrophorus vespilloides (burying beetle)
Pathway
nvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108557166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nvl03041
]
108557166
03009 Ribosome biogenesis [BR:
nvl03009
]
108557166
Enzymes [BR:
nvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108557166
Spliceosome [BR:
nvl03041
]
Complex A
U2 snRNP components
U2 related factors
108557166
Complex B
108557166
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108557166
Ribosome biogenesis [BR:
nvl03009
]
Eukaryotic type
90S particles
Helicases
108557166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
nSTAND3
AAA_22
SRP54
ATPase
ResIII
AAA_25
ABC_tran
Microtub_bd
TsaE
AAA_7
T2SSE
Motif
Other DBs
NCBI-GeneID:
108557166
NCBI-ProteinID:
XP_017769072
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MSKRRIEVLDPFIKKKREERGISTAVTTPSGGITTTSTPSSVNSLNGSPYSQKYHELFRK
RITLPVFEYKAEFMNLLAENQCIVLVGETGSGKTTQIPQWCVDYARSVGSKGVCCTQPRR
VAAMSVAQRVSEEMDVVLGQEVGFSIRFEDCSSAKTILKYMTDGMLLREGMSDPMLEGYQ
CILLDEAHERTLATDILMGVLKEVIKQRSDLKLIVMSATLDAGKFQQYFDNAPLMTVPGR
THPVEIFYTPEPERDYLEAAIRTVIQIHMCEEIAGDILLFLTGLEEIEAACKRIKREIDN
LGPDVGDLVCIPLYSTLPPNLQQRIFDDPPPNKPNGAIGRKVVVSTNIAETSLTIDGVVF
VIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTKPGKCFRLYTEKAYKNEMQ
DNTYAEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNL
TDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFIRPNEAKKAADDAKM
RFAHIDGDHLTLLNVYHAFKQNMEDPQWCYDNFVNYRTLKSADNVRQQLSRIMDRFNLKR
TSTDFTSKDYYLNIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCLDHKPEWVI
YNEFVLTTKNYIRTVTDIKPNWLLKIAPQYYDLQNFPQCEAKRQLEIIQTRLESKQYQQG
F
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgtagaatcgaagtgttggatccgttcatcaaaaagaaaagggaggagaga
ggaatcagtacagcagtgaccacacctagcggaggtattactactacttcgaccccgagc
tccgtaaactccttgaatggatcaccatattcccagaaataccatgaactgtttcgcaag
aggatcactttgccggtgttcgagtacaaggcggaattcatgaatctccttgccgagaac
cagtgcatcgtgctcgtcggtgagacaggttccggaaaaacaacccaaatcccgcaatgg
tgcgtagattacgcccgttctgtgggaagcaagggtgtttgctgtacgcaacccaggagg
gtggctgccatgtccgtggcacagcgtgtttcagaggaaatggacgtggttttaggtcag
gaagtcggtttcagcatccgtttcgaagattgctcatcagcaaagactatattgaagtat
atgacagatggtatgttgcttcgtgaaggtatgagcgatccaatgctggaaggataccaa
tgcatattgctcgatgaggctcacgaacgtactttggccacagacattcttatgggtgtg
cttaaagaggtgatcaaacagcgttcggatctcaagttgattgtcatgtcggccacattg
gatgccggcaaattccagcagtactttgataacgctcctttaatgacggtgccgggacgt
acccatcccgtagagatattttacactccggaaccggaacgcgattatttggaagccgcc
atcagaacagtcatccagattcacatgtgcgaggaaatcgccggcgatattctgcttttc
ctcactggtttagaagaaatcgaagcagcctgcaagcggatcaaaagggagatcgacaac
ttgggaccggacgtaggtgatctggtctgcatacctctgtactcgacgcttccaccgaac
cttcagcagaggatcttcgatgatcctccgccgaacaaaccgaacggcgccattggtagg
aaggtcgtcgtttccacaaacatcgccgaaacctcattgacaatagacggtgttgttttc
gtgatcgatcccggtttcgcaaaacagaaagtgtacaatccccgtattcgagtcgaatca
cttttagtttctccaattagcaaggcgtcagcgcagcagagggctggacgtgccggtcgt
acgaagccgggcaaatgtttccgcttgtacacggagaaggcttacaagaacgaaatgcag
gacaacacgtacgcggaaatcttgcgctcgaatctgggctccgttgttttacagctgaaa
aagttgggcatcgacgatttggtgcacttcgatttcatggatccaccagctcctgaaacc
ctcatgagggctttggagttactcaattatttagccgctctggatgatgatggtaacttg
accgatctaggtgcagtgatggcggagttcccactggacccacagctcgctaaaatgctc
atagccagttgcaatcataattgctccaatgaaatcctttctataactgctatgctgtca
gtcccacagtgcttcatcagaccaaacgaggctaagaaggctgccgacgatgccaagatg
cgtttcgcccatattgatggtgatcatctcaccttgctcaacgtgtaccacgcattcaaa
caaaatatggaagaccctcaatggtgttatgacaattttgtcaactacagaacgcttaag
tctgccgacaatgtaaggcaacagttgtcgagaattatggacaggttcaatttaaagcga
acctcgaccgatttcactagtaaagactactacttaaacattcgcaaagcattggtaaat
ggatttttcatgcaggttgctcatttagaacgcaccggtcactatttgaccataaaagac
aaccaaatagtccaattgcacccgtccacttgtttagaccataaacctgaatgggtaatt
tataatgaattcgtactgaccacgaaaaactacattcgcaccgtaaccgatattaaacca
aattggctgttgaagattgcaccgcaatattacgatctgcagaatttcccgcagtgcgag
gcgaagcgacaactggaaattatacaaactcggttagagtccaagcaatatcagcaagga
ttctag
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