Nicrophorus vespilloides (burying beetle): 108557812
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Entry
108557812 CDS
T04922
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nvl
Nicrophorus vespilloides (burying beetle)
Pathway
nvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108557812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvl03019
]
108557812
03041 Spliceosome [BR:
nvl03041
]
108557812
03009 Ribosome biogenesis [BR:
nvl03009
]
108557812
03016 Transfer RNA biogenesis [BR:
nvl03016
]
108557812
Enzymes [BR:
nvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108557812
Messenger RNA biogenesis [BR:
nvl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108557812
Spliceosome [BR:
nvl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108557812
Complex C
U4/U6.U5 tri-SnRNP related factors
108557812
Ribosome biogenesis [BR:
nvl03009
]
Eukaryotic type
Pre-60S particles
Helicases
108557812
Transfer RNA biogenesis [BR:
nvl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108557812
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
108557812
NCBI-ProteinID:
XP_017769968
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MSKAIDDLFDCFEDSGDGKEAASGTDELSKRVSQVDIKGVKRDHGEAEEKAVKKIRVEDV
DVEDIDFDEFKNRVVVHIIESLDSCTHEVAFPPGQIYTPLQPSRGEPAKKYQFQLDPFQK
ESILCVDNNQSVLVSAHTSAGKTVVAEYAIATSLKNKQRVIYTTPIKALSNQKYREFYEE
FKDVGLVTGDVTINPTASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVV
WEETLILLPHNVHFVFLSATIPNARQFAEWVSHLHQQPCHVVYTDYRPTPLQHFVFPCGG
SGIHMVVDENGVFKEDSFNAAMALLQNSGDAAKGDQIGRKGGIANKDATQTDIFKIVKMI
MDRNFAPVIVFSFSKKDCERYATQMTKLDFNTTAEKQLVDEVFSNAMDVLNDDDKRLPQV
ENLLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTGI
RKYDGKDYRWVSSGEYIQMSGRAGRRGLDDKGIVIMMVDEKVPPSTGKEIVKGLPDAINS
AFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQTSIPQLYENFTKCLSDYDNAHVENES
EVESYYNIRQELDALGVQFRKYITSPKYLIPFLQPGRLIKIKSENDEYDWGAIINFKKVS
ETGGRKKANPAVEGTKLQVDLLLHVACDDNNKDLFGSAIPKPCPPNQTGETEVIAVAATL
ITHISSVRLCCPSDLRTKDARKGMYKAIREVKKRFPKGPPLLNPVKDMKIMDNEFGDIVK
KIELLEKRMYEHSLHKSTTLETEYPKYEKKIEYRDALSDAKQKLLSAKSVLQLDELKCRK
RVLRRLGYCTNSDVIELKGRVACELSSADELLLTEMIFNGIFGALTPPQICSILSCFVFD
EKSNEPAKLIDELSGPLRQMQDIARRIAKISTEARLEIDEEAYVDRFKPFLMDVVYAWCN
GSSFSDLCRMTEIFEGSIIRCMRRLEELLRQMVQASKTIGNTELEDKFNMGIKLIKRDII
FASSLYL
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggcgatagacgatctgttcgattgcttcgaggattcgggggacggcaaggag
gccgcatccggtacggacgaactatcaaaaagggtatctcaggttgatatcaaaggtgtg
aagagggatcatggagaggcggaggagaaggcagtcaagaagattcgcgtcgaggacgtc
gacgtcgaggacattgattttgatgaattcaagaatcgagttgtggttcatataattgag
tcactggattcttgcacacatgaagtggcatttccaccaggacaaatatacacacccttg
cagccgagcagaggagaaccagcgaagaagtatcaatttcaattggatcctttccagaag
gaatcgatcctctgtgtagataacaaccaatcggtgttggtgtcggctcacacttccgcc
ggaaaaacagtcgtagctgaatatgctatcgccacctccctgaagaacaagcagcgcgta
atctacacgactcctataaaagcgctgtcgaatcagaagtatcgtgagttctacgaagag
ttcaaagatgtgggtctggtgaccggagacgttacaatcaatccgacagcgtcgtgcctt
attatgaccaccgagatcttgaggaacatgctgtatcgaggctcggagatcatgagggaa
gtcggttgggtcatcttcgatgaaatccattacatgcgtgacaaggagagaggtgtcgtc
tgggaggaaacgttgatcctgctcccacacaacgtgcacttcgtgttcttatctgcgact
ataccgaatgccagacagtttgctgaatgggtttcgcatctgcatcaacaaccttgtcac
gttgtctacacagactacagaccgacgcctcttcagcacttcgttttcccctgcggcggt
tcgggaattcacatggtcgtagacgaaaatggagtgtttaaagaggatagcttcaacgcg
gcgatggctctgctacaaaattctggcgatgctgcaaagggagatcaaatcggaaggaaa
ggtggcatagctaataaagatgccacgcaaacagatatcttcaaaatcgtgaagatgatt
atggataggaatttcgcgccagtcatagtgttcagtttcagtaaaaaagattgcgaacgt
tatgctactcaaatgactaaattggatttcaacacgactgctgaaaagcaattggttgat
gaagttttcagtaacgccatggatgttttgaacgatgacgacaaacggttaccacaagtt
gaaaatcttttacctttactcagacgaggaattggtatacatcatggcggtttgttaccg
atcttgaaggaaaccattgaaatccttttcggcgaaggcttgattaaagctcttttcgca
actgaaacattcgccatgggtttaaacatgcctgctcgcacggttctattcacgggaatt
cgcaagtacgatggaaaagattaccgttgggtgtcttcgggagagtacatccaaatgtct
gggcgtgcaggacgtcgtgggcttgatgacaagggtattgttataatgatggtggacgag
aaggtgccaccatcaactggaaaggaaatcgtcaagggtcttcctgatgccatcaactcc
gcctttcatttgacctacaacatggttttaaatcttctgcgcgttgaagaaatcaatcct
gaatatatgctggagaggtcgttttaccaatttcaaaatcaaacatctataccacagctc
tatgaaaattttaccaagtgtttgagtgattacgataacgcgcacgtcgagaacgagtct
gaagtggagtcttactacaacatcaggcaagagttggatgcgttaggtgtacaatttaga
aagtacatcacgtcgccaaaatatttaattccgttcctacagccaggacgtttgattaag
ataaaatccgagaatgatgaatacgattggggtgcgattataaactttaaaaaagtgtcc
gagactggaggtaggaagaaggctaatccggcagttgaaggtaccaaattacaagttgat
ttattgcttcacgttgcctgcgatgataataacaaggaccttttcggctctgccataccg
aaaccctgtccaccgaatcagaccggcgagactgaggttattgctgttgccgccacttta
ataactcacatttcctctgtcagactttgctgccccagcgatctgcgcacaaaagacgcc
cgaaaaggcatgtacaaagctataagagaggtgaagaaaaggttccctaaaggaccacct
cttttgaatcccgttaaagacatgaagatcatggacaacgagttcggtgatatcgtgaag
aaaatcgaactgcttgagaaaagaatgtacgagcattcgctgcataaaagcactacgctc
gaaacagaatatccaaagtatgaaaagaaaatcgaatatcgtgatgctctcagcgatgct
aagcagaagctgctgagcgccaaatctgtactgcagttggatgagcttaaatgcagaaaa
cgtgttttgagacggttgggctactgcactaatagcgatgtcatcgagcttaaaggacgt
gtggcctgtgaactcagcagcgctgatgaacttttgcttactgaaatgatattcaacgga
atatttggcgcccttactccacctcaaatttgctctatcttgagttgctttgttttcgac
gagaagagtaatgagcctgccaaacttattgacgaactgtcgggtcctttgaggcagatg
caggatattgcaaggaggatagcaaagatttcgaccgaagctcgattggagatagatgaa
gaggcttacgttgataggttcaagccattcttgatggacgtcgtgtacgcgtggtgcaat
ggttcgagtttcagcgatctgtgcagaatgacggagatcttcgaagggtcgataatccgt
tgcatgcgacgcctggaggagctgctcaggcaaatggttcaagcctccaagacgattggc
aacaccgagctggaagacaagttcaatatgggtatcaaattgatcaaaagggacattatt
ttcgcgtcgagtctttacttgtaa
DBGET
integrated database retrieval system
