Nicrophorus vespilloides (burying beetle): 108558559
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Entry
108558559 CDS
T04922
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
nvl
Nicrophorus vespilloides (burying beetle)
Pathway
nvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108558559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvl03019
]
108558559
Enzymes [BR:
nvl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108558559
Messenger RNA biogenesis [BR:
nvl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108558559
mRNA degradation factors
3'-5' decay
Pan complex
108558559
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
DNA_pol_A_exo1
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
108558559
NCBI-ProteinID:
XP_017771009
UniProt:
A0ABM1M8V9
LinkDB
All DBs
Position
Unknown
AA seq
1194 aa
AA seq
DB search
MYFDQTGIMGPDVSEMSGLESEYVQTQCVMADGGDRYGVCALAFDQSEELLWMGNQGGHV
TSYYTGHMQKYTSFQVHQNQDIRQILTMDEGILALTATSLRCQIRRGIPVFTHTSAHMTE
MQCMLQLSPHRLLLGGHKDKLIDFNMAVCKETKRADVGDAGCVMLRGHSRFVCAGNPLGR
IDLRDPNSLKVEHTLETHSGSLSDFDIQGNLLVTCGFSSRQGGNLSVDRFLMVYDLRMMR
AVSPIQTVVDPLYLRFLPSVSSRLAVVTALGQAQLVDTVALSNPKLSLLQMENPGTMCLA
FDISSSNQAMCFGDNAGSMHLFSSREDVIFNSYSRMTEHADTVASYPNFGIDDYDTPLSV
IPMPLISTEVLASDWPAHLMANTYRRAPAIDPEILRTMKMQGPIGYAPNPKASRRNQVMY
NLESNGVRSQSKQYSESRNFKQPVEESAGFVAIPKRYRKVEVKYNKLGVEDFQFDQYNKS
GFPGLEAMLPNAYCNAMIQVLYYTEPLRATLLSHLCEKEFCLSCELGFLFHMLSTCQNTP
CQPGNFLRAFRTVPEASALGLILSDLHPEAKMKVDLGALIQSWNRFILHQMHVEILEIKK
KREEGKINRKPFVYKETDFPAILGGSDRKKNFSSSDVNLSKLEDEKREEITEISQLLGTK
QLHINSCLKCNHEVRKESILLACNLVYPTNEPERDEWSFCDILKRSLTPEQVTPAWCDEC
SKFTPTSQARVLQSLPKLLAINTGLHNPQHKLFWQSQMDKIVAKAATTGLDTTPTRSSTP
TSSISSSKPCRYGDNCSRPGCRFRHSFDVAPQQSTSSNPYCSNNWLPHRLRMILKNDHLS
IRKLELDSDEPNEDDGESMEYNLTGVVCYITEPSTQERKNLVALIKVPGSYMQDGNNEPA
WYLFNDFSISCVPAHEATWFSLDWKTPCVLYYSTDEVTNASTNIFQSLNKDIFTQVNSIA
RGGGSAGITFTPLAEHEMPMPGDLVAMDAEFVTLNQEEAELRSDGKMSTIKPSQMSVARI
TCIRGQGPLEGIPFIDDYISTQEQVVDYLTKFSGIKPGDLDANFSSKHLTTLKSTYIKLR
FLQDSGVTFVGHGLKNDFRVINLVVPPEQVVDTVFLFHLPHHRMVSLRFLAWHFLGLKIQ
SETHDSTEDARAALQLYRRYKELEQENKIGDALSELYETGKILNWKVPEDESHQ
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcgaccaaactggtataatggggcctgatgtgtctgaaatgtctggtctggag
agtgaatatgtgcagacccagtgcgttatggcagatggaggcgacaggtatggggtatgt
gcattggcctttgatcagagcgaagagctattatggatgggcaatcaaggaggacatgtt
acttcttactatacggggcatatgcaaaagtacacttcatttcaagtgcatcagaatcaa
gatattaggcagatattaacaatggatgagggaatcttagcattaactgctacttcactg
aggtgtcagattcgaaggggcattccagtgttcacgcacacatctgctcatatgacagag
atgcaatgcatgctgcaattatcgccgcatcgactgctcctcgggggccataaagataaa
ttaattgatttcaatatggctgtgtgcaaagaaactaaacgggctgacgttggagatgct
ggttgcgttatgttaagaggtcactcgagatttgtttgtgctggtaatcctttgggaagg
atagatttaagagaccccaacagtttgaaggtcgaacatactctggaaacgcacagtggt
agtttgagtgattttgatattcaaggcaatttgttggttacttgtggatttagtagtagg
caaggtggtaatttgtctgtggacagatttttgatggtttacgatttgagaatgatgagg
gctgtgagtccaatacagacagttgttgatcctttgtatttgagatttttaccatcagtg
tcttcaaggttggctgttgtaacagctttgggccaggcacaactggtggatactgtagct
ttatccaatcctaaactctcgttattgcaaatggaaaatccaggaacgatgtgtttggcg
ttcgatataagctcgtcgaatcaggctatgtgcttcggcgataacgccggttcaatgcac
ctgttctcctcgcgcgaagatgtaatattcaacagctactcgaggatgactgaacatgca
gatactgtagcgtcgtacccgaatttcgggatcgacgattacgatactccattgtccgtc
atcccgatgccgttaatatctacagaagttctggcttcggattggcccgctcatttgatg
gcgaacacctacaggagggcgccggcaatagatccagagattctcagaacaatgaagatg
cagggtcccatcggctacgcaccaaacccgaaggcctcgaggcgcaatcaagtgatgtac
aatctggagagtaacggcgttcggtcgcagtccaagcagtattcggagagcaggaacttc
aagcaacccgtcgaggagagcgccggatttgttgccattcctaagagataccgcaaggtc
gaagtgaagtacaacaagctgggagtcgaagactttcagttcgatcagtacaacaagtcg
ggttttccaggcttggaggcgatgctcccgaacgcatactgcaatgcgatgatacaagtt
ttgtattacacagagcctctgagggcgacgctgttgtcgcatctgtgcgaaaaggagttc
tgtttgtcctgcgagctcggcttcctctttcacatgctatcgacgtgccagaatacgcct
tgtcagcctggcaacttcctgcgtgccttccgcaccgttccagaagcttccgcgctcggc
ctcatcctcagcgatttacatccagaagccaagatgaaggtcgacttgggcgctctaatt
cagagctggaacaggtttatactacatcaaatgcacgtggaaattttggagatcaaaaag
aaacgcgaggaagggaagattaatagaaaaccgtttgtgtacaaagagactgattttcca
gcaatattaggaggtagtgatagaaaaaagaatttcagttcttcagatgtgaacctttcg
aaattggaagacgagaagcgcgaggagattaccgagattagccaattgctaggaacgaag
cagctgcatataaatagctgtttgaagtgcaaccatgaagtgaggaaagaatctattttg
ttggcctgtaatctggtgtatcccactaacgaacctgaaagagacgagtggtcattttgt
gatatccttaaaaggtccttaactccagaacaggttacgccggcatggtgtgacgagtgc
tctaaattcacgccgacgtctcaagctagggtacttcaatctctaccgaaactgttggca
attaatacaggactgcacaatccgcagcacaaattgttttggcaaagccaaatggataag
attgtcgctaaggcagcaacaactggtttggatactactcctacgagatcatcgacgcca
acatcttctataagttcatcgaaaccttgtaggtacggggataattgttcgagacccggt
tgcagatttaggcatagcttcgatgtcgctcctcagcaatcaacaagtagcaatccgtac
tgcagtaacaattggctgccgcacaggttgcgtatgattctgaaaaacgatcatttaagt
atacgtaaattagaattggactctgatgaaccgaacgaagacgatggagagagcatggag
tacaatctaaccggcgttgtttgctacataacggagccgtcgacgcaggagagaaagaat
ttggttgctctgatcaaagttccggggagttacatgcaggatggcaacaacgaaccggca
tggtaccttttcaacgatttcagtataagttgcgtgcccgctcacgaggccacctggttc
agtttggattggaagacaccgtgcgttctgtactactccactgatgaggtgacaaacgcc
tcgacgaacatattccaatcgctgaacaaggacattttcacgcaagtaaacagcattgcg
agaggcggtggttccgctggaattactttcacaccgttggcggaacacgagatgccgatg
cccggtgatctggtggcgatggacgcggaattcgtcaccttaaaccaggaggaagcggag
ctcaggagcgacggaaagatgtcgacgataaagccgtctcaaatgtcggtggctagaatt
acctgcattcgcggtcaaggtccactcgaaggcattccgttcatcgacgactacatctcc
acgcaagaacaggtcgtcgattatctgaccaagttctcggggattaaaccaggcgatctg
gatgcaaacttcagctcgaaacacttgaccactctgaaatccacgtacattaagctccgg
tttttacaggacagtggcgtgactttcgttggacacggtcttaaaaatgatttcagagtg
atcaatttggttgtaccaccggagcaggtcgtggacactgttttcttgttccatctgccg
catcatcgaatggtctccttaaggttcttagcctggcatttcctaggtttgaagatccaa
tcggagacgcacgattcgacagaggacgctcgtgccgcgttgcagctataccgaaggtac
aaagagttggagcaggagaacaagatcggcgacgctctttctgagctctatgagaccggt
aaaatcctaaactggaaggtgcccgaagacgagtcccatcaataa
DBGET
integrated database retrieval system
