Nicrophorus vespilloides (burying beetle): 108560217
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Entry
108560217 CDS
T04922
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
nvl
Nicrophorus vespilloides (burying beetle)
Pathway
nvl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nvl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108560217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nvl03041
]
108560217
Enzymes [BR:
nvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108560217
Spliceosome [BR:
nvl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108560217
Complex C
U5 SnRNP specific factors
108560217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
HTH_61
AAA_19
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
108560217
NCBI-ProteinID:
XP_017773161
LinkDB
All DBs
Position
Unknown
AA seq
2135 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVISLVGKLSGTKMGDRAQRSR
PGKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFL
QEALGDQPRDILCGAADEVLTVLKNDRLKEKEKKKEAETLIGPIAEERFALLVNLGKKIT
DFGNEENKATTNEEQIDETYGINVQFEESEEEDDEDMYGEIREEMDDDEGEEAREDGAIH
AENLGGVENEMKKEKALHPLDIDAYWLQRRLSKIYDDAMMSQARAAEVLNVLRDANDDRE
CENQLVLLLGYDCFDFIKQLKKYRQMILYCTMLAKSQSETERSKIREKMSEDPSLSRILK
VLDTGKGDDDDDDDSNVRSSTRKNQDKNSDNAGGQITGSRQLIDFEDLVFNQGSHFMANK
RCQLPGGSFRKQRKGYEEVHVPALKPKPFNDNEKLKPVDELPKYVQPVFDGFRTLNRIQS
RLYKTALESDENLLLCAPTGAGKTNVALLTMMREIGKHINDDGTINADDFKIIYVAPMRS
LVQEMVGNFGKRLANYNLTVSELTGDHQLTREQIAATQIIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLEALVARTIRMIESTQEDVRLVGLSATLPNYQDVATFLR
IKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRYQVMNEIVYEKTMEHAGRNQVLIFVH
SRKETGKTARAIRDMCLEKDTLGQFLKEGSASMEVLRTEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQMITKLPDMLNAEII
LGTVQNVKDAVNWLAYTYLYVRMLRQPTLYGISHDQLKSDSLLEQHCGDIIHTAALILDR
SGLIKYDRKTGLFQVTEIGRIASHYYCTHETMATYNQLLKPMLSEIELFRVFSLSGEFRN
IAVREEEKMELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVYVTQ
SASRLMRAIFEIVLHRGWAQLTDKTLALCKMIDKRMWQSMSPLRQFRKMPEEIVKKIEKK
NFPWERLYDIGPNEIGELIRVPKLGKTIHKYVHQFPKLELSTHIQPITRSTLRVELTITP
DFQWDEKLHGASEGFWILVEDVDSEVILHNEYFLLKSKFANDEHLVKFFVPIFEPLPPQY
FLRVVSDRWIGAETQLPVSFRHLILPEKNFPHTELLDLQPLPITALRNACYESLYNGKFP
QFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTTIAEFAVLRLFQVNPEGKCVYLVPKEALA
ELVFTEWHNKFGQLLGKKVVLLTGETGTDLKLLAKGQIVVTTAEKWDVLSRRWKQRKNVQ
NVNLFIVDELHLIGGEDGPVIEVVCSRMRYISSQIEKPIRIVALSASLTDYKDVAQWLGC
NANCTFNFQPSVRPIPLELHVQGINITHNASRLIAMSKPVYNAIIRHSSHKPVIIFVPTR
KQARLTAIDLLTYAAAENQPNRFFHAEEEDIKPFLDRMTDKTLKETLSQGVAYMHEGLTP
SDHRLVEQLFDSGAVQVAVVTRDLCWGVNIFAHLVIIMDTQFYNGKVHAYEDYPVNDVLQ
MVGRANRPLDDDDAKCVLMCQSSKKDFFKKFLNDSLPVESHLDHRMHDHFNAEIVTKTIE
NKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKCISIEE
EMDCLPLNLGMIAAYYYINYTTIEMFSLSLSSKTKIRGLIEIISSAAEYEDVPVRHHEDN
LLRTLSQRLPNKLNSSAGPPKYNDPHNKTNLLLQAHLCRLQLGAELQGDTEVILAKAIRL
IQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFGNDIIKRCTEKNVDTV
FDIMELEDEDRSKLLQLSDAQMADVAKFCNRYPNIEMSYEVLDKEKIHSGSSVHVAVQLE
REDEVTGPVIAPFFPQKREEGWWVVIGDPKSNSLLSIKRLTLQQKARVKLDFVAPSPGHH
NYTLYFMSDAYLGCDQEYKFTIDVGDFESSESESE
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgctgcggccaggcagcttcagtacgagtacaaagcgaattccaatttggtg
ttacaagctgatgtccgtctgatagaaaggagaagtcgcgatgaggccactggtgaggtt
atctcccttgtgggcaaactgtccggcaccaaaatgggtgacagggcacagagaagtagg
ccaggcaaagcggaggaacgtaaagtcaagcgacagaagagagatgaggcccagtacgat
ttcaccaggatgaagggagccactctgttgtctgagggtgtggatgagatggttggaatt
atttacagaccgaaaactcaggagacaaggcaaacctatgaagtgctgttgagcttcttg
caggaagctctcggagatcagccaagagatatattgtgtggagctgccgacgaggtcttg
acggttctgaaaaatgatcgtctgaaggagaaagagaagaagaaggaggcagaaacgttg
atcggtccaatcgccgaggagaggttcgcgctgctggtgaatctcggcaagaaaatcacc
gatttcggaaacgaggagaacaaagcgacgaccaacgaagagcaaatcgatgagacgtac
ggtataaacgtgcagttcgaagaatccgaagaggaggacgatgaggatatgtacggtgag
atcagagaggagatggacgatgacgagggggaggaggccagagaggatggagccatccac
gccgaaaacttgggcggagtcgagaacgagatgaagaaggagaaggctttgcatcctctg
gatatagatgcttattggctgcaaaggcgattatcgaagatttacgatgatgccatgatg
tcgcaggcgagggccgccgaagtgctgaacgtgttgcgcgacgcaaacgatgatcgtgag
tgcgaaaaccaattggttctattgttgggttacgattgtttcgatttcataaagcagttg
aagaagtatcgtcagatgatcctgtactgcacgatgctggcgaaatcgcaaagcgagacg
gaacgttcgaagatccgcgagaagatgagcgaagacccctcgctgtcgaggatacttaaa
gtgttggatactggtaaaggcgatgatgatgatgacgacgattcgaacgtgcgttcgtca
acacgtaagaaccaagacaagaattccgataacgctggtggacaaatcaccggctcgaga
cagctgatcgatttcgaagatctggtctttaatcagggctcgcatttcatggcgaataag
agatgccagttgccgggcgggtcattcaggaagcagaggaaaggctacgaggaagtgcac
gtgccggccttaaaaccgaaaccgttcaacgataacgagaagttgaagcccgtggatgag
cttcccaagtacgtgcaaccagttttcgatgggttccgcactctgaacagaatccaaagc
aggctgtacaaaacggcgttggaatccgacgagaatttactgctgtgcgccccaactggt
gcaggtaaaaccaacgttgcactgttgacgatgatgcgcgaaatcgggaagcacatcaac
gacgatggaaccattaacgcggacgacttcaaaataatctacgtcgctcccatgcgatcc
ttggtacaggaaatggtgggtaatttcggtaagagattagccaattacaatttgaccgtg
tccgagttgactggagatcatcaactgaccagagagcagattgccgccacgcaaatcatc
gtttgcacgccggagaaatgggacatcattacgcgcaaaggcggagagaagactttcacg
tccttggtgagattgattattattgatgaaattcatcttttgcacgacgaaagaggtcct
gtattggaggctctcgttgccagaaccattaggatgattgaatccacgcaggaagatgtt
agattggtgggattgtcagctacattgcccaattaccaagacgtcgccacgttcttgcgt
attaagcctgagactggtctgttttacttcgataacagttttaggcctgtggcgctggag
cagcagtacattggggtgaccgagaagaaagctttgaagaggtatcaagttatgaacgag
atcgtttatgagaagacgatggaacatgcaggaaggaatcaggtgttgattttcgtgcat
tcgcgcaaggagaccgggaaaacggcgcgcgctattagagatatgtgcttggaaaaggac
acgctggggcagttccttaaagagggttcagcatccatggaagtgttgcgtaccgaagcg
gagcaggtgaagaatcaagagttgaaagatctgttgccgtatggtttcgccatccatcac
gccggaatgacgcgtgtggacaggacgctggtggaggatttgttcgctgataggcacatc
caagttctggtgtctacagccacccttgcgtggggtgttaatttacctgctcatactgtg
atcatcaagggaacgcagatctacaacccagagaaaggcagatgggtcgagctgggcgca
ctcgacgtgctccaaatgttgggcagagccggtcgtccgcagtacgataccaaaggtgag
ggcatcttaattaccaatcacagtgagctgcagtattacctgtcgctgctaaaccagcag
ctaccaattgaatcgcagatgatcaccaaactgccggacatgctgaatgcggagatcatt
ctcggcaccgtgcagaacgtcaaagacgcggtaaattggctcgcatacacttatctgtac
gtacgtatgctgaggcagcccaccttgtacggaatatctcacgatcagctgaaatccgat
agtttattggagcagcattgcggcgatatcatccatacggctgcattgatcttggacagg
agcggcctcatcaagtacgacagaaagaccgggctattccaggtaactgaaatcggcagg
atagcatcgcattactactgcacgcacgagactatggccacctacaatcaactgctgaag
ccgatgttgagcgagatcgagctgttccgtgtgttctcgctatccggtgagttcaggaac
atcgccgtgagagaggaggagaaaatggagttgcagaagttgatggaacgcgtgccgatt
cctatcaaggagagcatcgaagagcccagcgccaaagtcaacgtcctccttcaagcctac
atttcccagctgaagctcgaaggattcgccctgatgtccgacatggtgtacgtaacgcaa
tcggcatctcgtctgatgcgcgccatattcgagattgtgctgcatcggggttgggctcaa
ctcaccgacaaaaccctggcgctctgcaagatgatcgataagcgcatgtggcaatccatg
tcacctctgagacagttcagaaagatgcccgaggaaatcgtcaagaagatcgaaaagaag
aacttcccgtgggagcgactctacgacatcggccccaacgaaattggtgagctgatccgt
gtccccaagttgggcaaaaccatacacaagtacgtgcatcagttccccaagttggagttg
tccacgcacatccagcccatcaccagatccaccctgcgtgttgaattaaccatcacaccc
gatttccaatgggatgaaaagctgcacggagcctccgaaggcttctggattttagtcgag
gatgtcgacagcgaagtcatcctacacaacgagtacttcttgctcaaatcgaagttcgcc
aacgacgagcatttggtcaaattcttcgtgccgattttcgagcctctaccaccgcagtac
ttcctgcgcgtcgtctccgacagatggatcggggctgagactcagttgcccgtttcgttc
aggcatctgatcttgccagagaagaacttcccgcacaccgaattgctcgatctgcagccg
ctgccgatcacggcgttgaggaacgcttgctacgagtctctgtacaacgggaaattcccg
caattcaatccgatacagacgcaagtcttcaatgcagtctacaacagcgatgacaacgtg
ttcgtgggcgctcccaccggttcgggcaagacgacgatcgctgaatttgcagtgctgcga
ttgttccaagtgaatccggaaggaaagtgcgtgtatctggtacctaaagaagcattggcc
gaattagtcttcaccgagtggcacaataagttcgggcagttgcttggcaagaaagtggtc
ctgctgactggcgagaccggcaccgatttgaagctgctggccaaagggcagatcgtagtt
acgacggcggagaaatgggatgtgctgtccaggcgttggaagcagaggaagaacgtgcag
aacgtcaacctgttcatcgtagatgagttgcacctgatcggaggcgaggatggacctgta
atcgaggtggtctgctcgaggatgaggtatatcagttcgcagatcgaaaaaccaattagg
atagtggcactctccgcttctttgaccgattacaaggatgtggcgcagtggctggggtgc
aacgcgaattgcaccttcaatttccagccgagcgtgaggcctatcccgctggagttgcac
gtgcaaggtatcaacatcacccacaatgcgtccagattgatcgcgatgtcaaagccagtc
tacaatgccatcatcaggcacagctcgcacaaacctgtaattattttcgttccgacgagg
aagcaggcccgattgaccgccatcgacctgctgacgtacgccgcggctgagaatcagccc
aaccgattcttccacgccgaggaggaggatatcaaacccttcctggacaggatgacggat
aaaacgctgaaggaaactctgtcgcagggagtcgcttacatgcacgaaggtttaacaccg
agcgatcatcgtttggtcgaacagctgtttgattccggtgcggtccaagtggccgtcgtc
accagagatttatgctggggcgtcaacattttcgcccatctggtaattataatggacact
caattctacaacggaaaggtgcacgcttacgaagattaccctgtcaacgatgtcctgcaa
atggttggaagggcgaatcgaccattggacgatgacgacgctaaatgcgttctgatgtgt
caaagctccaagaaggatttcttcaagaagttcttgaacgattcgctccccgtcgagagc
catttggatcacaggatgcacgatcacttcaacgcagagatcgtcaccaagacgatcgag
aacaaacaggatgcagtggattacctcacctggaccttcctgtatcgcaggttaacgcag
aatcccaattattataatttgcaaggtgtcacgcacagacacttatccgatcatttgtct
gagctggtggagaacactttatcagatttggagcaatccaagtgtattagcatcgaggag
gagatggactgtttaccgttgaatttgggtatgatcgctgcctattattatattaattac
acgacgatagagatgttcagtttgtcgctgagcagcaagaccaagatcagagggttgatt
gaaattatatcgtccgcggcggagtacgaagatgtgccggtgcggcatcacgaagataac
ctgctgaggacgctgtcgcagcgtctaccgaacaagttgaattcgtcagccggtccaccc
aaatacaacgatccccataacaagaccaatttgctgctgcaggcgcatctttgtcgtctc
cagttgggagccgaactccaaggcgatacagaagtgattttggcaaaggccatcagattg
attcaagcctgcgtcgacgtgctcagttcgaacggctggttgagtcccgccgtcgccgcc
atggaactcgcgcagatggtaacgcaagctatgtggagcaaggattcctatctgaagcaa
ttaccgcactttggtaacgacatcatcaaacggtgcaccgagaagaacgtggacactgtg
ttcgacatcatggaattggaggacgaggatcgctccaagctgctgcaattgagcgacgcg
cagatggccgacgtcgccaagttctgtaatcgttacccgaacatcgagatgagctacgag
gtgctggacaaggagaagatccattccggctcgtcggtgcacgttgctgtgcagctggag
cgagaggacgaagtaaccggcccggtgatcgcaccgttcttccctcagaaacgtgaggag
ggttggtgggtcgtgatcggggatccgaaaagcaactcgctgctgtccatcaaacggctg
actctgcaacagaaggccagggtcaagctggacttcgtcgccccgagccccggacaccat
aattacacgctgtacttcatgagcgatgcctatctcggatgcgaccaggagtacaagttc
accatcgatgtgggagatttcgagtccagcgagagcgaatccgaatga
DBGET
integrated database retrieval system
