Nicrophorus vespilloides (burying beetle): 108565216
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Entry
108565216 CDS
T04922
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
nvl
Nicrophorus vespilloides (burying beetle)
Pathway
nvl03020
RNA polymerase
nvl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nvl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108565216
09124 Replication and repair
03420 Nucleotide excision repair
108565216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvl03021
]
108565216
03400 DNA repair and recombination proteins [BR:
nvl03400
]
108565216
Enzymes [BR:
nvl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108565216
Transcription machinery [BR:
nvl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108565216
DNA repair and recombination proteins [BR:
nvl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108565216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
108565216
NCBI-ProteinID:
XP_017780044
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MYENNEDNYEDEDGGVISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSIQRIVE
DSPQIDLQAEAQHTSGGIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDIIKTIVRDGQDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAMKDGKYAFKAEIRSCLEHSSRPTSALWVNMM
ARGGQATKKAAIGQRIIAILPYIKQEIPIIIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQSVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMFHRLLLASLGRRELDDRDHYGNKRLDLAGPXXNNILSFKIFRLFKNLVKEVK
MYAQKFIDRGKDFNLDLAIRTKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFA
STLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGS
QPSPILEFLEEWSMENLEEIAPSAIVDATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDI
IVSEVSMIRDVRDREIRIYTDAGRICRPLLIVENGTLSLRKRHIDMLKDREYNNYGWQVL
VASGVVEYIDTLEEETVMIAMSPDDLRHQKEYAYCSTYTHCEIHPAMILGVCASIIPFPD
HNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAG
INSIVAILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDTESKRIGDQEEQFEIPTKQ
TCQGMRHALYDKLDDDGIISPGIRVSGDDVVIGKTIILPVNDDELDGTNKKFTKRDASTF
LRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGVQYRQEDMP
FTCEGLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISTLL
QEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM
EGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNLCGLIAMANMRNNTF
ECKGCKNKTQISQLRLPYAAKLLFQELMSMNIAPRLMVIN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagaataatgaagataattatgaagatgaagatgggggagtaatcagctctgaa
ctgtggcaagaggcctgctggatcgtcattaacgcatactttgacgagaaaggtttggtc
cgtcaacagctggacagttttgatgagttcattcaaatgtccatacagagaattgttgag
gattccccacagattgacttgcaagcagaagctcaacacacatctggagggattgaaaat
cctccaagatatttattgaaatttgaacaaatctatttatcaaaaccaacacattgggaa
aaggatggtgcaccatcccctatgatgcccaatgaggctcgtttaaggaatcttacatat
tctgctccactgtatgttgatatcataaaaaccattgttagagatggtcaagatcctata
gaaactcaacatcaaaaaacatttattggaaaaattcccattatgttgagatcaacatat
tgcttgctcagcggtctaacggatcgtgatttgactgagttgaatgaatgccctttggat
ccaggtggttattttattattaacggctcagagaaagtacttattgctcaggagaagatg
gctacaaatactgtttacgtttttgcaatgaaggacggaaaatacgctttcaaagctgaa
atccgttcgtgtttggaacacagttcaagaccaacttctgcattatgggttaatatgatg
gctagaggtggtcaagctacaaagaaggcagctattggtcagagaatcatagcaatttta
ccatacattaaacaggaaattcctattataattgtttttcgcgcattgggcttcgtcgcc
gatcgcgatatcctcgaacatattatttatgatttcgacgatccagaaatgatggaaatg
gtcaaaccatctttggatgaagccttcgttattcaagaacaaagcgtcgctttgaatttc
attggagccaggggtgctaggcctggagttacgaaggaaaaacgtattaaatatgctagg
gaaattctgcaaaaagaaatgttgcctcatgtcggtgtttccgatttctgcgaaacaaaa
aaagcatatttcttgggatacatgtttcacagattgttattggcgtcactcggcagaaga
gaattagatgacagggatcattacggtaataaacgtttggatttggctggaccannnnna
aacaatatcttgtcatttaaaatcttcagattatttaaaaatctggtgaaagaagtgaag
atgtacgctcaaaagtttattgaccgggggaaagacttcaatctcgatcttgctattagg
acgaagctcattaccgatggtttgaggtattctttggctactggtaattggggcgatcaa
aagaaagctcatcaggccagagctggagtgtctcaagtattaaaccgtttaactttcgct
tcaactttatcgcatttgcgtcgtgtgaattccccaatcggtcgtgatggtaaattggcc
aaaccgaggcagttgcataacacgctttggggtatgatctgtcctgccgaaaccccggag
ggtgccgccgtaggtctcgtaaagaacttagctttgatggcttacatttccgttggttct
caaccttccccaattttggagttcttagaagaatggtccatggagaacttagaggaaatc
gctccttctgctattgttgatgctactaagatatttgttaacggatgttgggtgggtatt
catagagatcctgaacaattaatggcgactttgaggaaactcagacgtcagatggacatc
atcgtatctgaagtatcgatgatccgtgatgtcagagatcgcgaaattaggatttatacc
gacgccggtcgtatctgtagaccgcttcttatagttgagaatggaacattgtcattgagg
aaaaggcacatcgacatgttgaaagaccgcgaatacaacaattacggctggcaagttttg
gtcgcctcaggtgtcgtcgagtacatagacactctggaggaggaaactgtgatgattgcc
atgtctcccgatgatttgcgtcatcagaaggaatatgcttattgttcaacatacacacat
tgcgaaatccatccggcaatgattttgggcgtttgcgcttcgattattccattccctgat
cacaaccaaagtcccagaaacacttatcaaagtgctatgggtaaacaagctatgggagtt
tatattacaaacttccacgtacgaatggacactttagcgcatgtactgtattatcctcac
aagcctctggtaacaacaagatccatggagtatctgcgtttcagagagttaccagctggt
attaacagtattgtagctattttatgttacacgggatacaatcaggaggattctgttatt
ttgaacgctacagccgtagaaagaggatttttcagatctgtgttttaccgttcatataaa
gatactgaatcaaagcgtattggtgatcaggaagaacaattcgaaatacccacgaaacaa
acgtgtcagggtatgcgtcacgctttatatgacaaattggatgatgatggtattatatca
cctggtattcgtgtgtctggagatgacgtggttattggaaaaacaattattttacctgta
aacgatgatgaattggatggtaccaacaagaagttcaccaaaagggacgcttcgacattc
ttgcgtaacagtgaaacgggagttgttgatcaggtcatgttaacattaaactctgaaggt
tacaagttttgtaaaatcagggtgaggtctgtgcgaatccctcaaattggcgacaaattc
gcgtcgcggcacgggcaaaaaggtacctgcggtgtccaatacaggcaagaggatatgcct
tttacttgcgagggattaactcccgatattattatcaaccctcacgctattccatcccgt
atgacaattgggcatttaattgaatgcattcaggggaaagtttcctcgaataaaggagaa
atcggcgacgccactccgttcaacgatgccgtcaacgtgcagaaaatctctaccctcttg
caagagtacggttaccagttgagaggtaacgaagtcatgtacaatggacacaccgggagg
aaaattaatgctcaggttttcttgggtcctacttattatcaacgtctcaagcatatggtg
gacgacaagattcactcaagggctcgaggaccagtccagatccttgtgagacaacctatg
gagggtagggctagagatggtggtctgcgtttcggcgagatggaacgagattgtcaaatt
tctcacggcgccgcgcagtttctcagggagagactgttcgaggtctccgatccgtacagg
atccacgtttgcaatttatgtggactcattgctatggctaacatgcggaataacacgttt
gaatgcaaaggatgtaaaaacaagactcagatctcacagctgcgtcttccttatgcagct
aaacttctgttccaggaattgatgtcaatgaatatcgcaccaaggctgatggtcattaat
taa
DBGET
integrated database retrieval system
