Nitrososphaera viennensis: NVIE_000240
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Entry
NVIE_000240 CDS
T03200
Symbol
ecr
Name
(GenBank) exosome complex RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
nvn
Nitrososphaera viennensis
Pathway
nvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NVIE_000240 (ecr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvn03019
]
NVIE_000240 (ecr)
Messenger RNA biogenesis [BR:
nvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NVIE_000240 (ecr)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NVIE_000240 (ecr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_1
RRP40_S1
S1_RRP4
KH_PNO1_2nd
KH_2
KH-I_KHDC4-BBP
KH_KRR1_2nd
KH_6
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AIC14207
UniProt:
A0A060HLZ5
LinkDB
All DBs
Position
21456..22145
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AA seq
229 aa
AA seq
DB search
MYIPRVNDLVIGKIVDHTSLSWEVDINSCFSANLPASDVFGRDFSPARDDMTKHLAIGDM
ITARVAAFDRTRDPMLTLQDRDLGKIPRGELLKISATRVPRLIGKRGSMIQTIEQATQTR
VLIGQNGIVVVTGRSPEGIEQAVKAIRMVEDEAHTSNLTQRIKVLLNVPDTPAAEVPPAS
NGSNGSGNGGAAAVPQETTTRADSSASGEATTAAEGGGEEEGMEVEDQK
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
gtgtacatcccgcgcgtaaacgacctcgtgataggcaagatagtggaccacacctcgctt
tcatgggaggtggacatcaattcatgcttctcggctaaccttcctgcatccgacgtcttt
ggcagggacttttcgccggcaagggacgacatgacaaagcaccttgcgataggcgacatg
attaccgcaagagtcgcggcctttgacaggacgcgcgaccctatgctgaccctgcaggac
cgcgaccttggcaagataccaaggggcgaactgctaaagatatcggcaactagggtcccg
cgcctgataggcaagcggggctcgatgatccagacgatagagcaggcaacgcagacgcgc
gtgctcatcggccagaacggcatcgtggtcgtgacgggaagaagcccagaaggcatagag
caggcggtaaaggcgatcaggatggtggaagacgaggcccacacgtccaacctgacgcag
aggatcaaggtcctccttaacgtgccggacacgcccgcagcagaagtgccgccggcaagc
aacggcagtaatggcagtggtaatggtggggctgctgcagtaccgcaggaaacaacaacc
cgtgcggattcttctgcaagtggtgaggcaactacagcagcagaaggaggaggagaagaa
gagggaatggaggttgaagatcaaaaatga
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