Nitrososphaera viennensis: NVIE_012940
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Entry
NVIE_012940 CDS
T03200
Name
(GenBank) Superfamily II helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nvn
Nitrososphaera viennensis
Pathway
nvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NVIE_012940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvn03019
]
NVIE_012940
03009 Ribosome biogenesis [BR:
nvn03009
]
NVIE_012940
Enzymes [BR:
nvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NVIE_012940
Messenger RNA biogenesis [BR:
nvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NVIE_012940
Ribosome biogenesis [BR:
nvn03009
]
Prokaryotic type
rRNA helicases
NVIE_012940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
P-loop_SecA
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
AIC15529
UniProt:
A0A060HFZ3
LinkDB
All DBs
Position
complement(1098256..1099530)
Genome browser
AA seq
424 aa
AA seq
DB search
MAVKESATTFEELGLDEKVQKALAENGFEKPFPIQEAAIPLILQGKDVIGQAHTGTGKTA
AFGLPLLSKVKNGNRQVQALILVPTRELAVQVTGELIKFSKYAQVWTVSVYGGQSFGVQT
GLLKRGAHIVVATPGRLIDHIKRGSIKLDGVKFVVLDEADRMLDMGFIDDIEFILSRLGK
SGSKDRQTLLFSATMSPEILRLAKGHMREGQIREIRLNTKEVGLDNIEQSYLLVSEQQKF
SHLTSLIRPHKEQVIVFAATKRRADKLAANLKAGGFRASAIHGDLSQKERDHVMNRFRRG
ADSVLVATDIAARGIDVPAVGHVINYDVPNEPETYFHRIGRTARAGAEGTAVSLVSPDRF
GEFERILRQTKLPISRLNEAMGIEVPALQQQRGRHPHQPQQHGRSGRNRRNFGGGSKRRN
WRRR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcagtaaaggaatccgcaaccacgtttgaggaactcgggcttgacgagaaggtccag
aaagcgcttgcagaaaacgggtttgagaaacccttcccgatacaggaggcggcaatacca
ctcatcctgcagggaaaagacgtcatagggcaggcgcacacgggcaccggcaagacggcg
gcatttgggttgccgctcttgtcaaaagtgaaaaatggcaataggcaggtgcaggcgctg
atactcgtgccgacaagggagcttgcggttcaggttacaggcgagctgataaaattttca
aaatacgcgcaggtatggacggtttcagtttacggcgggcagagctttggggttcagacc
ggcctgctaaagaggggtgcccacatagtggtcgccacgcccggcaggctcatagaccac
ataaagcggggctcgataaagttggacggagtcaagtttgtagtccttgatgaggccgac
aggatgcttgacatgggctttatcgacgacatcgagttcatactgtcaaggctgggcaag
agcgggagcaaagacagacaaacgttgctgttttccgcgacaatgtcgccggagatccta
aggcttgccaagggccacatgcgggaagggcagatacgcgaaataaggctgaacacgaag
gaagtcggccttgacaacatcgagcagtcgtacctcctcgtaagcgagcagcagaaattc
agccacctgacaagcctcatccgcccgcacaaggagcaggtgatagtgtttgccgcgaca
aagcgcagggcggacaagctggcggcaaacctgaaggcgggaggttttcgggcgtctgca
atacacggcgacctgtctcagaaagagcgcgaccacgtcatgaacaggttccgcaggggc
gcagacagcgtgcttgtggcaacagacattgccgcaaggggaatcgacgtcccggcggtg
ggccacgtgataaactatgacgtgccaaacgagccggaaacctattttcacagaataggc
cggaccgcaagggcaggagcagaaggcactgccgtctcgctcgtgtctcccgaccggttt
ggcgagtttgaaaggatactgaggcaaacgaaacttccaataagccgattgaatgaggcg
atggggatcgaagtccctgcgctgcaacagcagcgcggccgccacccgcatcagccgcag
cagcacgggcgcagcggccggaaccgccgcaactttggtggcggaagcaaaagaagaaac
tggagaagaagataa
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