Nitrososphaera viennensis: NVIE_015180
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Entry
NVIE_015180 CDS
T03200
Name
(GenBank) uncharacterized UPF0027 family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nvn
Nitrososphaera viennensis
Brite
KEGG Orthology (KO) [BR:
nvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nvn03016
]
NVIE_015180
Enzymes [BR:
nvn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NVIE_015180
Transfer RNA biogenesis [BR:
nvn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NVIE_015180
Prokaryotic type
tRNA splicing ligases
NVIE_015180
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Complex1_LYR
Motif
Other DBs
NCBI-ProteinID:
AIC15763
UniProt:
A0A060HJR9
LinkDB
All DBs
Position
1295076..1296548
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AA seq
490 aa
AA seq
DB search
MTEIATRAGLKVRKVGDREFRIDADASRGMKVPVSIYANDSLISKMVTDRTIDQAANVAT
LPGVRKHVVVLPDGHEGYGFPVGGVAATDVEEGVISPGGVGYDINCGVRLLRTNLTESDV
RPRLKDLVNDLFKSIPSGVGSEGAVRLSKSELDELLVEGVGWAVRHGYGTSHDAEVCEES
GTMKGADPGSVSDTARKRGAPQLGSLGSGNHFLELQKVDRIFDERAAKAMGIEKEGQLTV
LVHCGSRGFGHQICTDYLRVSESALRKYSISLPDRELACVPNNSKEGESYRKAMFSALNF
AWANRQMITHWTRKTFERFFGMSEDGLKMDLVYDVSHNIAKVERHRIDGEGTRDVVVHRK
GATRAFPSGMEQVPGKYRDLGQPVIIPGSMGTASWILLGGKNSLDLSFGSTAHGAGRTMS
RSAAKRSYTPEGVRGNLESRGIYLKALTKDGMVEETPEAYKDVDAVADVSDSLGIATKVV
RLVPIGVIKG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgacagagattgctacaagggctggcctcaaggtgaggaaggtaggcgacagggagttc
aggattgacgccgacgcctcgcggggcatgaaggtgccggtcagcatttacgctaacgat
tcgctcatttccaagatggtgacagacaggaccatcgaccaggcggcaaacgtcgccacc
ctgccgggcgtgagaaagcacgtcgtggtgttgccggacggccacgagggctatggcttt
ccggtgggaggtgtggccgcgaccgacgtcgaggagggcgtgataagccccggcggcgtg
ggctatgacatcaactgcggcgtgaggcttctccgcacaaacctcacggaaagcgacgtg
aggccgcgcctcaaggacctcgtgaacgacctgttcaagtccattccctccggcgttgga
agcgagggcgccgtgaggctgagcaagtcggaactggacgagctcttggtcgaaggcgtc
ggctgggcggtgaggcacggctacggcacaagccacgacgcagaggtgtgcgaggaatcc
ggcacgatgaagggcgccgaccccggaagcgtgtctgacactgcaagaaagaggggcgcg
ccgcagcttggctcgcttggctctggcaaccattttctggaactgcaaaaggtggacagg
atttttgacgagcgggcggcaaaggcgatgggcatcgagaaagaagggcagctgacggtg
ctggtgcactgcggctcccggggttttggccaccagatctgcaccgattatttgcgcgtg
tccgagtctgcgctgcgcaagtacagcatctcgctccctgacagggagcttgcgtgcgtg
ccaaacaactccaaggaaggagagagctacagaaaggccatgttctccgccctcaacttt
gcgtgggccaaccgccagatgataacccactggacaagaaagacgttcgagcgctttttc
ggcatgtcagaggacggattaaagatggaccttgtgtacgatgtgtcgcacaacatagcc
aaggtggagcgccacaggattgacggcgaggggacccgcgatgtggtggtacaccgcaag
ggcgcgacaagggcgtttccttccggcatggagcaggttcccggcaagtaccgcgacctc
gggcagccggtgataataccgggctcgatgggcactgcaagctggatactgcttggcggc
aagaactcgcttgacctcagctttggctcgactgcgcatggcgccggcaggaccatgtca
aggtctgcggcaaagcgcagctacacgcccgaaggcgtccgggggaacctggagtcaaga
ggcatatacctcaaggcgctgacaaaggacggcatggtggaagagacgccggaggcgtac
aaggacgtcgatgcagtggcagacgtgtcggactcgcttggcatcgccacaaaggtagtg
aggcttgtacccatcggggtgataaagggttga
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