Nitrososphaera viennensis: NVIE_021610
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Entry
NVIE_021610 CDS
T03200
Symbol
cdc48-5
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nvn
Nitrososphaera viennensis
Pathway
nvn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NVIE_021610 (cdc48-5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvn03019
]
NVIE_021610 (cdc48-5)
03009 Ribosome biogenesis [BR:
nvn03009
]
NVIE_021610 (cdc48-5)
04131 Membrane trafficking [BR:
nvn04131
]
NVIE_021610 (cdc48-5)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nvn04147
]
NVIE_021610 (cdc48-5)
Messenger RNA biogenesis [BR:
nvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NVIE_021610 (cdc48-5)
Ribosome biogenesis [BR:
nvn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NVIE_021610 (cdc48-5)
Membrane trafficking [BR:
nvn04131
]
SNARE
SNARE associated proteins
Others
NVIE_021610 (cdc48-5)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NVIE_021610 (cdc48-5)
Exosome [BR:
nvn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NVIE_021610 (cdc48-5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
TIP49
AAA_22
AAA_5
CDC48_2
AAA_33
AAA_14
AAA_lid_PRS2_C
nSTAND3
NPHP3_N
Mg_chelatase
AAA_28
IstB_IS21
AAA_18
RNA_helicase
AAA_7
Zeta_toxin
AAA_3
Sigma54_activat
TsaE
AAA_11
AAA_30
Parvo_NS1
AAA_17
AAA_19
bpMoxR
NACHT
NB-ARC
ResIII
AAA_24
SLFN-g3_helicase
ATPase
PhoH
NTPase_1
DUF815
Viral_helicase1
Bac_DnaA
Vps4_C
TniB
AFG1_ATPase
Zot
Motif
Other DBs
NCBI-ProteinID:
AIC16426
UniProt:
A0A060HSK4
LinkDB
All DBs
Position
1821790..1823964
Genome browser
AA seq
724 aa
AA seq
DB search
MAKNGGKNANRITLKVAETNPKFVGRGMALVDPRIMEELNLSAGDVLEINFKGKKSYALL
WSSQREDYDKKLIRIDGYTRNNIGVGIDDSVIVQKVNVKKAEQVILAPTEELNIVGLEEH
LPELLEGRVVGKGDVIPLNIMGRRIGFAVTGTSPSDVASLIDSNTEFVIGSVPKSAGKGV
SRVAYEDIGGLKNEVQKVREMIELPLRHPEIFERIGIEAPKGILLHGPPGTGKTLLAKAV
ANETNANFYSIGGPEIMSKFYGESEERLREIFREAEENAPSIIFIDEIDSIAPKREEVSG
DVEKRVVSQLLTLMDGIKSRGKLVVIGATNRPNAIDPALRRPGRFDREIEIGIPDEQGRL
DILMIHTRGMPLTQDVDLASIAKVTHGFVGADLEALSKEAAMRSLRRILPEINLEQPNIP
AEILNKIKVTKQDFDEALRDIQPSAMREVLVQKSNVKWEDIGGLQQVKEELAEAIEWPLK
HGDLFAQADVRPPKGILLHGPPGTGKTMIAKAVAATSEANFISIKGPELISKWVGESEKG
VREVFRKARQAAPCVVFFDELDAIAPRRGSEGDAHVTERVISQMLTEMDGLEDLKGVVVI
GATNRPDIIDEALLRPGRFDRILEVPVPDKEARKQILQIHTRKKPLASDVDLDKMVEMTE
GMTGADIAALVNAAAMTAIKEHVNLSGGGKLEVSMRHFEAALDKIKPRERGSGKKTREDP
EEIS
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaatggtggcaagaacgctaacagaattacgttaaaagtggccgaaacaaac
cccaagtttgtcggcagagggatggctctagttgatccaagaatcatggaggagctaaac
ctgtctgctggagacgtcttggaaattaatttcaagggcaagaaaagttacgcgcttctc
tggtcgagtcagcgagaagattatgataagaagcttatcaggatagacgggtatacccgc
aataacatcggagttggaatcgacgatagtgttatcgtccaaaaagttaatgtgaaaaaa
gcagagcaagttatcctggccccgacagaagagctcaacatcgtaggtctcgaagaacac
ttgccggagctgctggaaggtcgcgtggtcggaaaaggcgatgtaatcccgctcaacata
atgggcagaagaatcggctttgccgttacaggcacttcgccatcggatgtggcatcgcta
atcgacagcaataccgaatttgtaattggctctgtaccaaaatccgcaggcaagggagtc
tcaagggtagcttatgaggacattggcggcttgaaaaacgaagtgcaaaaagtcagggag
atgatagagctgccccttcggcatcctgaaatatttgagcgcattggaattgaggctcct
aaaggcatacttcttcacggccctcctgggactggcaagacgctccttgccaaggcagtc
gcaaatgaaacaaatgccaacttttactcgataggcggcccggagataatgagcaaattc
tacggggagagcgaagaaaggctaagagaaatctttagggaagctgaagaaaatgcgccg
tcaataatattcattgacgaaatcgactcgatagctccgaaaagagaagaggtcagtggt
gacgttgaaaaaagagtggtatcgcagcttttgaccttgatggatggaataaagtccagg
ggcaagctcgtagtgattggcgcgaccaaccggcctaatgccatcgatcctgcccttaga
cgcccgggcaggttcgacagggaaatagagatagggataccggatgaacaaggccggctt
gacatactcatgatccatacaagggggatgcccttgacacaagacgttgaccttgcgtca
atagccaaggttactcatgggtttgtcggcgccgacttggaggcattgagcaaggaagcc
gccatgcgctcgcttagaaggatactgccagagattaacctggaacagccaaacatacct
gccgaaatattgaacaagatcaaagtcacaaagcaggactttgacgaggcgctgagggat
atccagccttctgcaatgcgcgaggtgctggtgcaaaagtcaaatgtaaagtgggaagac
attgggggcctgcaacaagtaaaggaggaattggcagaagcaatagaatggccactcaag
catggcgacctatttgcacaagcagacgtccgaccgcccaaaggcatactactccatggt
ccacctggcactggcaagacaatgatagccaaggcggtggcagcaacatcagaagcaaac
ttcatcagcataaaagggccggagttgataagcaagtgggtcggcgagtcagaaaaaggt
gtaagggaagttttcagaaaggcccggcaggcagcaccgtgcgtcgtgttctttgacgag
ttggatgcaatagcgccgcgcagaggctctgaaggcgatgcgcatgtgacagagcgggta
ataagccagatgctgacagagatggacggcttggaagacctgaagggcgtggtagtgata
ggcgcgaccaaccggccggatatcattgacgaggcgctccttcgccccggaagatttgac
aggatacttgaagtgccagtaccggacaaggaagcaaggaagcagatactgcagatccat
acaaggaaaaaaccccttgcttcagatgttgacctggacaagatggtcgaaatgacagag
ggcatgactggtgcagatattgcagctttggtgaacgcagcggcgatgactgctatcaag
gagcatgtcaacctaagtggtggcggcaaactggaagtgtcgatgagacactttgaagca
gccctggacaagatcaagccaagagagaggggctcgggcaaaaagacaagagaagatccc
gaagagatctcttga
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