Neogale vison (American mink): 122892417
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Entry
122892417 CDS
T08764
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03013
Nucleocytoplasmic transport
nvs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122892417 (UPF2)
03015 mRNA surveillance pathway
122892417 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvs03019
]
122892417 (UPF2)
Messenger RNA biogenesis [BR:
nvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122892417 (UPF2)
mRNA cycle factors
P-body specific factors
122892417 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
122892417
NCBI-ProteinID:
XP_044084833
UniProt:
A0A8C7BWB9
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Position
12:complement(119342935..119452012)
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AA seq
1271 aa
AA seq
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MPAERKKPASMEEKETLLNNKEKDCSERRPVSSREKPKDEIKLTAKKEVIKVPEDKKKKV
EEDKRKKEDKDRKKKEEEKVKAEEELKKKEEEEKKKHEEEEKKKQEEQAKRQQEEEAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQNKDSNKDDSKETKEPKDNKEVSNPDDLELELENLEINDDTLELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEREFLIKLGLVNDKDSKD
SMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaaactttactaaacaac
aaggaaaaagactgcagtgaaaggcggccagtgagcagcagggagaaaccaaaagatgag
atcaagcttactgccaagaaggaggttattaaggtccctgaagataaaaagaagaaagtg
gaagaagataagagaaaaaaagaagacaaggaccgaaagaaaaaagaagaagaaaaggtg
aaggcagaggaagaattaaagaaaaaagaggaagaagaaaaaaagaaacatgaagaggaa
gagaaaaagaagcaagaagagcaggcaaaacgtcagcaagaagaagaagctgcccagttg
aaagagaaagaggaatcccttcagcttcatcaggaagcctgggaacgacatcagttaagg
aaggaacttcgtagcaaaaaccaaaatgctccagacaaccgaccagaggaaaatttcttt
agccgactagactcaagtttgaagaaaaatactgcttttgtcaagaaactaaaaactatt
acggaacaacagagagactccttgtctcatgattttaatggcctaaatttaagcaaatac
attgcagaagctgtagcttctattgtggaagcaaagctaaaaatatctgatgtgaactgt
gctgtgcacttgtgctctctctttcaccagcgttatgccgacttcgctccgtcacttctt
caggtttggaaaaaacattttgaagcgaggaaagaagagaaaacgcctaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgataag
gaaggtctttccttaatctatgaacagctaaaaaatattattaatgctgatcgggaatcc
catactcatgtttctgtggtgattagtttttgtcgacattgtggagatgatatagctgga
cttgtgccacggaaagtgaagagtgctgcagagaagtttaatttgagttttcctcctagt
gagataattagtccagagaaacaacaacctttccagaatcttttaaaagaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagcttcagaatactgagagacaaaac
aggcgtattctccattctaaaggggagctaagtgaagatagacataaacagtatgaggaa
tttgctatgtcatatcagaagctgctggcaaattctcaatccttagcagacctcttggat
gaaaatatgccagatcttcctcaagacaaaccaacaccagaagagcatgggcctggaatt
gatatttttacacctggtaagcctggagaatatgacttggaaggtggtatatgggaagat
gaagatgctcggaatttttatgagaacctcattgatttgaaagcttttgttccagccatc
ttgtttaaagataatgagaaaagttgtcagaataaagattccaacaaagatgattccaaa
gagacaaaagaacctaaagataataaggaagtatcaaatcctgatgatttggaactcgag
ttggagaatctagaaattaatgatgacactttggagttagagggtggagatgaagctgag
gatctcacaaagaaacttcttgacgagcaagaacaagaagatgaagaagccagcactgga
tctcatctcaagctcatagtagatgctttcctccagcagttgcccaactgtgtcaaccga
gatctgatagacaaggcagcaatggatttttgcatgaacatgaatacaaaagcgaatagg
aagaagttggtacgggcactctttatagttcccagacaaaggttggatttgctaccattt
tatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaa
acaaagaacaaaactgttcgttttattggagaattaactaaatttaagatgttcacaaaa
aatgatacattacattgtttaaagatgcttctatcagacttttcccatcaccatattgaa
atggcatgtactctactagaaacctgtggaagatttcttttcagatcaccagaatcacac
ctgaggaccagtgtacttttggagcaaatgatgagaaagaaacaagcaatgcacctcgat
gcaagatatgttacaatggtggagaatgcatattactactgcaacccacctccagctgaa
aaaacagtgaaaaagaaacgtcctcctctccaggaatatgtccggaaacttttgtacaag
gatctctccaaagttaccactgagaaggttttgagacagatgcgaaagttgccctggcag
gaccaagaagtgaaagactatgttatttgttgtatgataaatatctggaatgtgaaatat
aatagtattcattgtgtagccaacctcttagcaggcctggtcctctaccaagaagatgtt
ggaatccatgttgtggacggagttttagaagatattcgattaggaatggaggttaaccag
cctaaatttaatcagagacgtatcagcagtgccaagttcttaggggaactttataattat
cgaatggtggaatcagctgttatttttagaactctttattcttttacttcatttggtgtt
aacccagatggctctccaagttcactagatcctcctgaacaccttttcagaattagacta
gtgtgcactattttggatacctgtggccagtactttgacagaggttccagtaaacgaaaa
cttgattgcttccttgtatactttcagcgttatgtttggtggaagaaaagtttggaagtt
tggacaaaagaccatccatttcctattgacatagattacatgatcagtgatacactagaa
ctgctaagaccaaagatcaaactctgtaactctctggaagaatccatcaggcaggtacac
gacttggaacgagaattcttaataaaactaggcctagtaaatgacaaagattcaaaagat
tccatgacagaaggagaaaatcttgaagaggatgaagaagaagaagaaggaggagctgaa
acagaagaacaatctggaaatgaaagtgaagtaaatgaaccagaagaagaggagggttct
gataatgatgatgatgaaggtgaggaggaagaggaagagaataccgattaccttacagac
tccaataaagaaaatgaaactgatgaagaaaatactgaggtaatgattaagggaggtgga
cttaagcacgtaccttgtgtggaagatgaggacttcattcaagctctggataaaatgatg
ctggaaaatcttcagcaacgaagtggagaatctgttaaagtgcaccaactagatgttgct
attcccttgcatctcaaaagccagctgaggaaagggcctccactcggtggtggggaggga
gaggcagagtctgcagacacaatgccgtttgtcatgttaacaagaaaaggcaataaacag
cagtttaagatccttaatgtacccatgtcttcccaacttgctgcaaatcactggaaccag
caacaggcagaacaagaagaaaggatgagaatgaaaaagctcactttagatatcaatgag
cggcaagagcaagaagattatcaagaaatgctgcagtctcttgcccagcgcccagctcca
gcaaacaccaatcgggagcggcggcctcgttaccaacatccaaagggagcacctaatgcg
gatctaatctttaagactggtgggaggagacgttga
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