Neogale vison (American mink): 122893974
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Entry
122893974 CDS
T08764
Symbol
SYNPO
Name
(RefSeq) synaptopodin isoform X1
KO
K21112
synaptopodin
Organism
nvs
Neogale vison (American mink)
Pathway
nvs04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
122893974 (SYNPO)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
122893974
NCBI-ProteinID:
XP_044087260
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All DBs
Position
1:complement(274812319..274849326)
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AA seq
1149 aa
AA seq
DB search
MLGPHLPPPPHGLSDDRPTPSTFRIPDGSYRCLALEAEESSGGEEGLQGEAGLMNLEEDR
VASRNGDNLTCRATQGALDLPNALGIQPPSCSREAQGCSQHDNSASKDWDTVKAQQVVIA
TPRPSAGPRIAQKPALGLSTSLTERDLKEAKARSQQIAAQLTTPPSSNSRGVQLFNRRRQ
RVNEFTLENHSRRGQKPSQESLQAPPASPAGYASGLSLSPTSLPEPGPPRNTSSQSPDVG
VPVHSMEGCSEKANLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQSPA
SPPTAEVHSPAADVNQNLSSLSGTLITPTSNSNHSLPAADINQNPPGPVTPQSPPLSSSP
QPSEAQLPPNGTVSDSKPGTLCSGGQPPEPAVEVRPSTLLIDKVSVPPTTTNTFSRQTAP
LSSSGTPAPDFMSSSLLIDLRPSAPAVSAEQETSVWAATATPAKLYSEVHFTLAKPPSVV
NRTARPFGIQGSGSTSQIERSPMVERRHLGEKVLTPQPSSMADRSPRPQRHMMSHSPMVE
RRSVAQRSPALERRPLGNFTPPPTYAETLSTAPPASRVRSPPSYSALYPSSDPKPSPLKG
QAVPASKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEAGV
EEEPFALGAEASNFQQESAPRDRASPAAAEEVLPEWASCLKSPRIQAKPKPKPNQNLSEA
SGKGAELYARRQSRMEKYVIESSGHTELARCPSPTMSLPSSWKYSTNAPGGFRVASRSPA
RTPPASLYHGYLPENGVLRPEPTKQPAYQLRPSLFVLSPIKEPVKASPRAASPAKPSSLD
LVPSLPKGALPASPALPRASRSSPGLYTSPGQDGLQPTAVSPTYSSDISPVSPSRAWSPR
AKQAPRPSFSTRNAGIEAQDRRESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGRGSSMS
SPPPLPPPPPMSPSWSERSVSPLRPEAEARPPSRQLQALLARNIINAARRKSASPRPAGA
ESLRPFSPPGAQAQPPRPPPPPPPRLRSPQPTRPGPPVAAAPGATFSPIPRSPLPAGPSP
CASPRSPLPATPRPFPYRRSPTDSDVSLDSEDSGAKSPGILGYNICPRGWNGSLRLKRGS
LPTEASCTT
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgctgggtccccacctcccacctccaccccacggactcagcgacgacaggcctaccccc
tccaccttccggatccctgatggcagctacaggtgtctggccttggaggctgaggagagc
agtggtggcgaggagggcctgcagggagaggcggggctcatgaacttagaggaggacagg
gtggccagcaggaatggggacaatttgacctgcagagccacccaaggggcactagacctg
cccaatgccctgggcatccagccacccagctgctccagggaagcccaagggtgttcccag
catgacaacagtgccagcaaggactgggacacggtgaaggctcagcaggtggtgatagcc
accccccgccccagcgcgggacccaggattgcccagaaaccagcattgggcctgagcact
agcctcactgagagagatctgaaagaggccaaggcccgcagccagcagatcgcagcccag
ctcaccacccctcccagctccaactcccgcggcgtccagctcttcaacaggcgccggcag
agggtgaacgagttcaccttggagaaccacagccggaggggacagaagcccagccaggag
tccctccaagcgccccctgccagccccgcaggctatgcctcagggctcagcttgagtccc
acctcactgcctgaaccaggccctccaaggaacaccagcagccagagccccgacgtaggg
gtccctgttcatagcatggagggatgctcggagaaggccaatttgctgcggcacctggag
aaggtggccagcgaggaggaggaggtaccgctggtggtttatttgaaggagaatgccgcc
ctgctgacggccaatgggctgcacctgtcccagaaccgagaagcccagcagagcccagca
agcccgccgacggcggaggtccacagcccggctgcagacgtcaaccagaacctgtcctca
ctcagtggcaccctcatcacaccgacctcgaacagcaaccacagcctgccggctgcagac
atcaaccagaacccgccgggccctgtcaccccacagagcccgccgctctcaagcagccca
cagccctcggaggctcagctccctcccaatggcacggtgtccgattccaaacccggcacc
ctgtgttccggcgggcagccgccagagccggctgtagaggtgagacccagcacgctcctg
attgataaggtgtccgtgccacctaccaccaccaacaccttctccagacaaacagctccc
ctctccagctctgggaccccggccccagatttcatgtccagctccctgctcatcgattta
cggcccagcgccccagccgtgtcagcggaacaagagacatctgtgtgggcagccacggcc
actcccgccaagctctacagtgaggtccacttcacgctggccaagcccccatcagtggtc
aacaggaccgccagacccttcggcatccagggttcaggaagcaccagccagatagagcgg
agccccatggtagagagacgacatctcggagagaaggtcctgactccccagccctccagc
atggcagacaggagccctcggccacagagacacatgatgtcccatagccccatggtggaa
aggaggtctgtggcacagcgaagcccagccttggagagacgccctttggggaacttcacc
ccacccccgacctatgctgagaccttgtccacggcacccccagcttcccgggttaggtct
cccccttcctactctgccctttaccccagctctgaccccaagccttctcctctgaagggc
caggccgttcctgccagcaagacgggcatattggaggagtcaatggcccgcaggggcagc
cggaaatccatgttcaccttcgtggagaagcccaaggtgaccccgaacccagacctgctg
gatcttgtgcagacggctgatgagaagcggaggcagagggaccagggggaggcaggcgtg
gaggaggagccctttgcactgggggccgaggcctccaactttcagcaggagtcagcgccc
cgggacagagccagccctgcggctgctgaggaggtcctcccggagtgggcctcgtgcctc
aagtccccacgcatccaggccaagccgaagcccaaacccaaccagaacctgtccgaggcc
tccgggaagggggctgagctctacgcccgccgccagtcccggatggagaagtacgtcatc
gagtcctcgggccacaccgaactggcccgctgcccttcgcccaccatgtccctgccttca
tcctggaaatattccaccaatgctcctggcggcttccgagtggcatcccggagcccagct
cggaccccgcccgcctccctctaccacggctacctgcccgagaatggggtcctgcgcccc
gagcccactaagcagccagcctaccagctgcggccctcgctcttcgtcctctcgcccatc
aaggagcctgtcaaggcctcgccgagagccgcctctcctgccaagccgagctccctggac
ctggtgcccagcctccccaagggggccctcccggcgtccccagccctgcctcgggcctcc
cgctcctcaccgggcctctacacctcccccggccaggacggcctccagcccacagccgtg
agcccgacctacagcagtgatatctcccccgtgtcaccctccagggcgtggtctccccgc
gccaagcaggcccccaggccctccttctccacccggaatgctgggatcgaggctcaggac
cgccgggagagcctgcccacctccccgccctggacgccgggcgcctcccggccccccagc
agcctggacggctgggtgagcccggggccgtgggaacccggccgggggagcagcatgagc
agccccccgccgctcccgccgccgccgcccatgtcgccctcgtggagcgagcgctcggta
tccccgctgcgacccgaggcagaggcgcgacctcccagccgccagctgcaggccctcctg
gcgcgaaacatcatcaacgccgcccggcgcaagagcgcctccccgcggccggcgggcgcc
gagagcctgcggcccttctcgccgcccggggcgcaggcgcagccaccgcggccgccgccg
ccgccaccgccgcgcctgcgctcgccgcagcccacacggcccggccccccagtcgccgcc
gctcccggggccacgttctccccaatcccgcggagcccgctgcccgccgggccctcgccc
tgcgccagcccccggagcccgctgcccgcgacgccccggcccttcccctaccgccgctcg
cccacggactccgacgtgtccctcgattccgaggactccggggctaagtcgcccggcatc
cttggctacaacatctgtcctcgcgggtggaacggcagcctgaggctcaagcgtggcagc
ctccccaccgaggcctcctgcaccacctaa
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