Neogale vison (American mink): 122895447
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Entry
122895447 CDS
T08764
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03440
Homologous recombination
nvs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122895447 (PALB2)
03460 Fanconi anemia pathway
122895447 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nvs03400
]
122895447 (PALB2)
DNA repair and recombination proteins [BR:
nvs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
122895447 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
122895447 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
122895447
NCBI-ProteinID:
XP_044088805
LinkDB
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Position
14:34125595..34152031
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AA seq
1181 aa
AA seq
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MEEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQKAEKVKNSVKKTVEEHDCLLQ
QEISPRPNHSEHKNKISPYDTLQINTHLDEETGEKTPITLDVEPESFNPGHGPVEELHIQ
RTGDIREHFPYQVSGSGAEKRQSKPPGRRKKQQKRTYTAQARESFFDADSFLLSEKRLKK
QEEINRENPRTPVNERTCRSGSMSDIPSSREPMTETNVRGILIPPTAKPQRGVSALIGGN
NFSRVPTVASFTLSNSSSSQHLEHKPPKGDCELTTHSIKNINPASPVNLEAQGRSMMVST
DNSEVNKAVSASGQLPRSPDLEANNSYSVKELTYDNLPANENQNLKGQNLTEESLPSPHN
TLEGRNESLQENEVLSQSTSLSPEVISPASAEGQTHSCTMVEGLLFPAEYYVRTTRRMSN
CQRKVALQAVIQSHLGVRKKGFKNKTTEETKNLNLCSEETDQSEPRTSGTRTRQLSSRRS
EKCLLLTEVNSPTGPTEANLPRKAVTQPSGRRHRGKRKTVSPHVLDHHQRLLPTPGTAGV
HRSKEEVTLHEDPDEKAIHHGKKRIKGKDSRCPKEDSLSSRNNAYLALDSAAFTASFQEN
EMLSLKQLSSFLKTTDFQLPDEVFGPLKLEKLKSCSEKPEKVEPFVSNMYGQKHLKEGNG
CVLEELSPKQINIEMEDLEEEIIVLPGKAQAKTSDLTSQSQKKGLSSSVLLFTPLNTGAP
EDNNRPTAEMCSPTFPILGTTPAFDSQAHCEKVCSEVGPTCSKPQLPHLKDSDRKQCDSW
ASPSKSDGSLVVSGRGQPSCDCDSGPRATPFPTGSVTLKDNQLCGNPHPESWKQTEVADL
PACNSLNPGHLQLVSKLKNPSGSCSVDVSATWWEIAGFKEPCIITACEYVVSLWKPLDTW
QWEKLYSWQFTEVPVLQIVPVPDVCNLVCVALGNLEIREIRALLCSSDGKREKQVLLSSG
NIKAVLGLTERRLVSSSGTLCDQQVEIMTFAEDGGSKEKRFLMSPEETVLTFAEVQGMQE
ALLGTTIMNNIVIWNLKTGQLLKKMHIGDSYQASVCHKAYSEMGLLFIVLSHPCAKESEP
LGSPVFQLIVINPKTSLSVGVMLYCLPQGHAGRFLEGDVKDHFAAAVLTSGTIAIWDLLL
GHCTAVLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYRY
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgggaagccactcagctgtgaggagaaggaaaagttgaaggaaaaa
ttagcattcttgaaaagggaatacagcaagacactggcccgccttcagcgtgcccaaaaa
gctgagaaggttaagaattctgtaaagaaaacagtggaagaacatgattgcttgctccag
caggaaatttcaccacggccgaaccactcagaacataaaaataaaatatctccttatgac
acattacaaatcaacacccatctggatgaagaaactggagaaaagacacctatcacactt
gacgttgaacctgagtccttcaaccctggacatggccctgtggaggaactacatatacaa
agaacaggtgatatccgggaacattttccctaccaggtcagtggctctggtgctgagaaa
aggcagagtaagccgccagggagaagaaaaaagcagcagaagagaacatatactgcacag
gcaagagaatctttctttgacgcggattcattcctactctctgagaaaagactaaagaaa
caggaggaaatcaatagagaaaatcctaggactcctgtaaatgaaagaacttgccgttca
ggttctatgtctgacattcctagttctcgagaaccaatgacagagactaacgttaggggt
atattaattccaccaactgccaaaccacaaagaggtgtcagtgctctaataggaggaaat
aatttctccagggttcctacggttgcttcatttactctgtcaaatagcagtagtagtcag
catcttgaacataagcctcctaaaggtgactgtgaactcactactcacagtataaaaaac
attaaccctgcttcacctgtaaacctagaggcacaaggcagaagcatgatggtctctaca
gataactcagaggtaaacaaagctgtaagtgcaagtggccagctgcccagaagtcctgac
ttagaggcaaataattcatactctgtaaaagaactcacttatgataacttaccagcaaat
gaaaaccaaaacttaaaaggacaaaatctcacagaggagtctttaccatctcctcataac
actcttgaaggtagaaatgaaagtcttcaggaaaatgaggttttaagtcaatctacgagt
cttagcccagaagtaatctcccctgcttctgcagaaggtcaaacacattcttgtacaatg
gtcgaaggccttctgtttcctgcagagtattacgttagaacgacacgacgcatgtcaaac
tgccagaggaaagtagcgctgcaggctgtcattcaaagtcatttgggtgtcagaaagaaa
ggttttaaaaataaaactacggaggaaactaaaaatttaaacctttgcagtgaagaaact
gaccagagtgaacctaggacatctggcacacgcacaagacaactaagttcaagaagatct
gagaaatgtctcttgttaacggaggtcaactctcccactgggcctactgaagctaacctt
cccaggaaggcagtcacccagccatctggtagaagacacagaggaaaaagaaagacagtc
tccccacatgtattagatcatcatcaacgacttttgccaactcctggcacagcaggtgtt
catagatccaaggaagaagtcaccttacacgaagatccagatgaaaaagcaattcatcat
ggtaagaagagaattaaagggaaggacagtcgttgtccaaaagaggattccctttcttcc
agaaataatgcttatctagctttggattctgctgcattcacggcttcgtttcaggagaat
gaaatgctaagtttaaagcaactgtcatcttttctcaaaaccacagactttcagttaccc
gatgaagtctttggacctcttaaacttgaaaaactgaagtcctgttcagaaaaaccagaa
aaagttgagccttttgtatcaaacatgtatggacagaaacaccttaaggagggaaacggt
tgtgttttagaagaactgagtcctaaacaaatcaatattgaaatggaggacttggaagag
gaaattattgttctccccggaaaagcacaagctaaaacatcagacctaacaagccagtct
cagaaaaagggcctttcttcatctgtattactttttacgcctttaaatactggtgccccc
gaggataataacaggcccacagcagagatgtgctcgcccacttttcccatcttaggcact
actccagcttttgattcccaagcacactgtgaaaaagtgtgttcagaggtgggaccaact
tgctctaaaccccaacttcctcacttaaaagacagtgatcggaaacaatgcgacagttgg
gccagcccatcaaaatcagatggcagcctggttgtgtcaggtagaggacagccttcctgt
gactgtgattctggtccccgggcaaccccttttcccaccgggtcagtcactctcaaagac
aatcagctgtgtggaaatccacacccagagtcatggaaacagactgaagtagcagacctt
cctgcttgtaatagcttaaacccaggccaccttcaattggtttcaaagttaaagaatcct
tccggttcctgctcggtggatgtgagtgccacgtggtgggaaatagcaggtttcaaggag
ccgtgtatcataactgcctgtgaatacgtggtttctctttggaaaccacttgatacttgg
cagtgggaaaaactttattcctggcaattcacagaagttccagtattacagatagttcca
gtgcctgatgtttgtaatctcgtgtgtgtggctttgggaaatttggaaatcagagaaatc
agggcattactttgttcctctgatggtaaacgtgaaaagcaagtattactgagttctgga
aatataaaagctgtgcttggcctgacagagaggaggctagtcagtagcagtgggaccctt
tgtgaccaacaagtagaaatcatgacatttgcagaagatggaggaagcaaagaaaaaaga
tttttgatgtcccctgaagagactgtactaacttttgctgaggtccaagggatgcaggaa
gctctgcttggtaccactataatgaacaacattgttatttggaatttaaaaactggtcag
ctcctgaaaaagatgcacattggtgattcctaccaagcttcagtctgtcacaaagcctat
tctgaaatggggctcctgttcattgttctgagccatccttgtgccaaggagagcgagccg
ctgggaagccccgtgtttcagctgatcgtgattaaccctaagacaagcctgagtgtgggt
gtgatgctctactgtcttcctcaagggcacgctggaaggttcctggagggggatgtgaaa
gatcattttgcagccgcagtattgacttctggaacaattgccatttgggacttacttctg
ggtcactgtactgctgtccttccacctgtctctgatcagcattggtcttttgtgaaatgg
tcaggtacagattcccatttgctggctggacaaaaagatggaaatatatttgtgtaccgc
tactaa
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