Neogale vison (American mink): 122895727
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Entry
122895727 CDS
T08764
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs04612
Antigen processing and presentation
nvs05145
Toxoplasmosis
nvs05152
Tuberculosis
nvs05164
Influenza A
nvs05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
122895727 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
122895727 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
122895727 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
122895727 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
122895727 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
nvs01001
]
122895727 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
nvs04054
]
122895727 (CIITA)
Enzymes [BR:
nvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
122895727 (CIITA)
Protein kinases [BR:
nvs01001
]
Serine/threonine kinases: Other
TAF1 family
122895727 (CIITA)
Pattern recognition receptors [BR:
nvs04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122895727 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_14
LRR_8
LRR_9
CARD
Motif
Other DBs
NCBI-GeneID:
122895727
NCBI-ProteinID:
XP_044089305
LinkDB
All DBs
Position
14:24138187..24183985
Genome browser
AA seq
1208 aa
AA seq
DB search
MNHFQSILTRVQMLMSGRRPSQVQALLDHMLEKELLSREYHCALLREPDGEALARKISLT
LLERGDPDLALSRWAWSGWQLPVAERDPGSKDHGGSGQCAAMDLGPLEGGYLELLNSSAD
PLQLYHLYDQTDLAREELELCSEPDMDTINCEQFSKLLCDIEGDEETREAYANIAELDQY
VFQDSQLDGLGKDIFIEHIGLDEMISENVEVLEEAGQKSQKRPFPEELPVDLKHRKLAEP
VTVPVVTGTFLVGPVSDSSALPCLSPPAVFNKEPESSPCWPEETVLMPVPPSSSLLGCLS
LPAGPIQIVPSLPSLPQGLWQISGPGTGMSSMVIYQGEMPQASQVLPSSGPAVQSLPKSP
DRPGSTSPFAPSATDLPGMPEPALTSRANTTEDQMSPTQGLAAHEVSSKPPKWPESVEQF
CRSLRDKYRAEPADPEGILVEVELVRARLERSGDKSQERELATPDWAERQLARGGLAEVL
LAAGDRRRPRETQVIAVLGKAGQGKSRWAREVSRAWACGQLPQYDFVFYFPCHCLDRAGD
GYRLQDLLFCLGPQPQPADEVFSHVSRRPDRVLLILDAFEGLEGQDGLLHSAGGPVSTEP
HSFRGLLAGLFQRKLLRGCTVLLTARPRGRLAQSLSKADVLFEVTGFSAQQAETYVTRYL
ERAGGTERRERALALLRRRPFLLSLIHSPTVCRAVCRLSEALLELGGEAELPSTLTGLYV
GLLSPAARDSPPGALVGLARLAWELGRRHCGTLRDSQFPSAEVRAWAVARGLVQPVPGAP
DAELVFSSFLLQCFLGAVWLALSTEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLL
FQPHTDGLGALAGPAGAAVVARKQKALSRYLKRLQPGMLRAGRLLELLHCAHEAADAGLW
QHVVQGLPARLSFLGTRLTPPNAYVLHSALEAAGRDFSLDLRRTGIDPAGLGSLVGLHCV
TRFRASLSDTVGLWESLQQRGETELLRAVEEKFTIEPFKANSPKDVEDLGNLVQIQRTRS
SSEDTAGELPAVRDLKKLEFALGSVSGPQAFPKLVRILEAFSSLQHLDLDSLSENKIGDE
GVEQLSATFPRLKALETLNLSQNSITDVGACKLAEALPSLASSLLRLSVYNNSICDVGAE
SLAHVLPDMVSLRVLDVQYNKFTAAGAQQLAASLRKCPHVETLAMWTPTIPFGVHEHLQQ
LDSRISLR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttccagagcatcctgacgcgggtccagatgctgatgtccggccgtcggccg
agtcaggtgcaagccctcctggaccacatgctggagaaggagctcctgtcccgggagtac
cactgtgccctgctccgtgaacctgatggcgaggccctggccaggaagatctccttgacc
ctgctggagagaggagacccagacttggccctctcaaggtgggcgtggagtgggtggcag
ctcccggtggccgagagggaccctggctccaaggaccacggtggcagtgggcagtgtgct
gccatggacctggggcctctagaaggcgggtacctggagcttctcaacagtagtgctgat
cccttgcagctctaccacctctatgaccagacggacctggctagagaagagcttgagctc
tgctcagaacccgacatggacaccatcaactgcgaacagttcagcaaactgttgtgtgac
atcgaaggtgatgaagagaccagggaggcttatgccaatattgcggaactggaccagtac
gtgtttcaggactcccagttggatggtctgggcaaagacattttcatagagcacatagga
ttggatgaaatgatcagcgagaatgtggaggtgctggaggaagcagggcagaaaagtcag
aaaagacccttcccagaggagctgcccgtggacttgaagcacaggaagctagccgagccc
gtcactgtgcccgtggtgactggcacgttcctggtggggccagtgagcgactcctcagca
ctgccctgcttgtcacctcctgctgtgttcaacaaggagccagaatccagcccgtgctgg
ccggaggagaccgtcctgatgcctgtgcccccttccagttccttgctggggtgcctcagc
cttcctgctggacccatccagattgtccccagcctcccctctctgccccaggggctctgg
cagatctcagggcctgggacagggatgtccagtatggtcatctatcaaggcgagatgccc
caggccagccaagtgcttccttccagtggcccggctgtgcagagcctccccaagtctcca
gatcggcccggctctaccagcccctttgctccgtctgcaactgaccttcctggcatgcca
gaaccagccttgacctcccgtgcaaatacaacagaggaccagatgtcccctacccagggc
ctggcggctcatgaggtctccagcaagcctccgaaatggcctgagagcgtggagcagttc
tgccgttccctccgggacaagtaccgggccgagcccgcagacccggaaggcatcctggtg
gaggtggagctggtgagggcgcggctggagaggagcggggacaagagccaggagcgggag
ctggccaccccggactgggcggagcggcagctggcccgcgggggtctggccgaggtgctg
ctggctgccggggaccgccggcggccgcgagagacacaggtgatcgccgtgctgggtaaa
gccggacaggggaagagccgctgggcccgggaagtgagccgcgcctgggcctgcggccag
ctgccccagtacgacttcgtcttctacttcccctgccactgtctggaccgcgcaggggac
ggttaccgcctgcaggatctgctcttctgcctgggcccccagccacagcccgcggacgag
gtcttcagccacgtctcgaggaggcccgaccgggttctgctcatcctggacgccttcgag
ggcctcgaaggccaagacggcctcctgcacagcgcgggcggaccagtgtccacagagccg
cactccttccgggggctgctggccgggctcttccagcggaagctgctgcgaggctgcacc
gtactgctcacggcccggccccggggccgcctggcccagagcctcagcaaggccgacgtc
ctgttcgaggtgactggcttctccgcccagcaggccgagacctacgtgacccgctacctg
gagcgcgccgggggcaccgagcgccgagagcgagccctggcgctcctccgccgccggccc
ttcctgctcagcctcatccacagtcccaccgtgtgccgggcagtgtgccggctctccgag
gccctcctggagctgggcggcgaggccgagctgccctccacgctcacgggactctacgtg
gggctgctgagccctgcggcccgcgacagccctccgggggccctggtgggactggccagg
ctggcctgggagctgggccgcagacactgtggcaccctgagggacagccagttcccatca
gcggaggtgagggcctgggccgtggcccgaggcctggtgcagcctgtcccgggggccccg
gacgcggagctggtcttctccagcttcctcctgcagtgcttcctgggggccgtgtggctg
gctctgagcactgagatcaaggacaaggagctgccgcagtacttggccttgaccccgagg
aagaagaggccttatgacaactggctggagggtgtgccacgcttcctggctgggctgctt
ttccagcctcacaccgatggcctcggagccctggcgggaccggcgggggctgccgtggtg
gccaggaagcagaaggcgctcagcaggtacctgaagcggctgcagcccgggatgctccgg
gccgggcggctgctggagctgctgcactgtgcccacgaggctgcggacgctgggctctgg
cagcatgtggtgcaggggctcccggcccgcctctccttcctgggcacccggctcacaccg
cccaacgcctatgtgctgcacagcgccttggaggcggccggccgagacttctccctggac
ctccgccgcactggcatcgaccccgctgggctggggagcctcgtgggactccactgtgtc
acccgtttcagggcttcgctgagtgacacggtgggcctgtgggagtctctacagcagcgt
ggggagaccgagctgctccgggcagtggaggagaagttcaccatcgagcctttcaaggcc
aactccccaaaggatgtggaagacttgggcaacctcgtgcagatccagaggacaaggagt
tcctcggaagacacagctggagagctccctgccgtccgggacctgaagaagctggagttt
gcgctgggctccgtctcgggcccccaggcttttcccaaactggtgaggatcctcgaagcc
ttttcctcccttcagcatctggacctggactcgctgagtgagaacaagatcggggatgag
ggtgtcgagcagctgtcagccactttccctcggctgaaggccctggagactctcaacttg
tcccagaacagcatcactgacgtgggtgcctgcaagctggctgaggccctgccctccctg
gcttcatccctcctcaggctgagcgtgtacaataacagcatctgtgatgtgggagcagag
agcctggcacatgtgcttccagacatggtgtccctccgggtgttggatgtccagtataac
aagttcacggccgccggggcccagcagctcgccgccagcctgagaaagtgccctcacgtg
gagacactggcgatgtggacgcccaccatcccgtttggtgtccatgaacacctacagcag
ctggactcacggatcagcctcagatga
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integrated database retrieval system
