Neogale vison (American mink): 122900749
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Entry
122900749 CDS
T08764
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
nvs
Neogale vison (American mink)
Pathway
nvs04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122900749 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nvs00536
]
122900749 (COL13A1)
Glycosaminoglycan binding proteins [BR:
nvs00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122900749 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122900749
NCBI-ProteinID:
XP_044095607
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Position
2:184114874..184255310
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AA seq
669 aa
AA seq
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METAILGRVNQLLDEKWKLHSRRRREALPKTSPGCHCPPGPPGPAGRPGIPGDKGAIGMP
GRVGVKGQPGEKGAPGDAGVSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGEMG
LTGPRGQPGPQGQKGEKGQCGEYPHREHLSSTLSALRSNQIITLKGEQGQAGIQGPPGPP
GPPGPSGPLGPPGLPGPMGPSGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAP
GIAVAGMKGEPGTPGAKGEKGAAGSPGLLGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGP
PGPKGEAGVDGPAGPPGRQGDKGEPGAPGNQGPVGPKGTKGEPGKGEMVDYNGNINEALQ
EIRTLALMGPPGLPGQIGPPGAPGVPGQKGEIGLPGPPGHDGEKGPRGKPGDVGPPGPQG
PPGKSGPAGMKGEDGHAGSPGEKGEKGEMGQAGPPGLDGPTGEKGEPGGQGRPGATGVPG
PIGLPGFTGEKGEPGEKGEPGVEVPGPPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGV
QGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDLGMTGPTGAAGLPGLHGPPGDKGN
RGERGKKGSRGPKGDKGDQGAPGLDAPCPLGHRGFKGEKGEPGLPGLDGLDAPCPLGEDG
LPVQGCWNK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggagacggctattttgggacgagtcaaccaactgctggatgagaaatggaagctccac
tctcggaggcgccgggaggccctcccgaagacgtctccagggtgccactgcccaccagga
cctcctggtcccgctggaagacctggcatcccgggggacaaaggtgccattgggatgcct
ggacgtgtgggagtaaagggccaaccaggcgagaagggggccccaggagatgccggcgtg
tccatcatcggcccccgaggccccccaggtcagccgggcactcgaggtttccctggattt
ccgggtcccattgggctcgatggcaaaccgggccacccgggacccaaaggggagatgggc
ctgacgggtccccgaggacagccgggacctcaaggacaaaaaggagaaaagggtcagtgt
ggagagtacccacatcgggagcacctgagcagcactctctcggctctgcgctccaaccag
atcattaccctgaagggggaacagggccaggccggcatccaaggcccaccagggccacca
ggcccccctggaccaagcggacccctggggcccccaggactgccagggcccatggggcca
tcaggcttacccgggcctcctggaccaaagggagacccaggaatccagggctaccatggc
cggaagggagaacggggcatgccagggatgcccggcaaacatggagcgaagggagctcct
ggaattgctgtggctgggatgaagggtgagccagggaccccaggagccaagggtgaaaag
ggggcggcaggctcccctgggctactcggcctcctggggcagaagggagaaaaaggtgat
gccggcaactccattggagggggcagaggggaacccggtcccccagggctgcccgggccc
cctgggccgaagggagaagctggcgttgacggcccggccggccccccaggacggcaagga
gacaagggggagcctggagcacctggaaaccagggaccagtcggccccaagggcaccaag
ggggaaccagggaaaggagagatggtggactacaacggaaatatcaacgaggctctccag
gagatccgaacgctggcattgatgggaccccccggtcttcccggacaaatcggcccaccc
ggagccccaggggtcccaggccagaagggggagatcggactgccaggccctccaggacac
gatggagaaaagggacctcgaggcaagccaggagacgtgggccctcctggtccccaaggc
cccccaggaaagtctgggcctgcaggaatgaagggagaagatggacacgcaggaagcccg
ggagagaagggggagaaaggagagatgggacaggcaggcccaccgggtctagacggccca
actggggagaaaggagaaccaggtggccaagggaggcctggagcaacaggagtccccggc
cctatcgggctcccgggatttacaggagagaaaggagagcccggggagaagggggagcca
ggagtggaggttcctgggcctccagggccagaggggccccccggacctccggggctccaa
ggtgttcccggaccaaagggggaagcaggactagatggagcaaaaggagagaagggtgtc
cagggagagaaaggagatcgcgggccgctgggattacccggtactccaggaccaatcgga
gtcccaggcccagcgggaccaaagggcgagaggggcagcaaaggcgacctggggatgacg
ggaccaacaggagcggctgggcttcctggtttacatggaccacccggggacaaaggaaac
cggggggagagggggaagaaaggctctagagggcctaaaggggataagggagaccaagga
gcgcctggattagatgccccctgcccgttgggacaccgaggttttaaaggagaaaaaggg
gagccggggttaccagggctggacggactggatgccccatgcccattgggcgaagatggc
ttgccagtccagggctgttggaacaagtga
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