Neogale vison (American mink): 122902979
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Entry
122902979 CDS
T08764
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03082
ATP-dependent chromatin remodeling
nvs04714
Thermogenesis
nvs05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122902979 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
122902979 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
122902979 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nvs03000
]
122902979 (ARID1B)
03021 Transcription machinery [BR:
nvs03021
]
122902979 (ARID1B)
03036 Chromosome and associated proteins [BR:
nvs03036
]
122902979 (ARID1B)
Transcription factors [BR:
nvs03000
]
Eukaryotic type
Helix-turn-helix
ARID
122902979 (ARID1B)
Transcription machinery [BR:
nvs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122902979 (ARID1B)
Chromosome and associated proteins [BR:
nvs03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122902979 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
TFIIA
Motif
Other DBs
NCBI-GeneID:
122902979
NCBI-ProteinID:
XP_044099211
LinkDB
All DBs
Position
1:complement(10144460..10588320)
Genome browser
AA seq
2453 aa
AA seq
DB search
MAARAAAAAAAAARARAGSGERRAPPGPRPAPGARDLEAGARGAAAAAPGPMLGGGGDGG
GLNNVHHHPLHPRHELNMAHNASTAAAAASTNSAKSGGSEAALKEGGSAAALSSSSSAAA
AAASSSSSSSGPGSVMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHH
HHALQQQLNQFQQQQQQQQQQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAAQPGPD
MEQPQHGGAKDSAAGSQADPPGQPLLSKPGDEDDAPPKMGEPAGGRFEHPGLGALGAQQP
PVAVPGGGGGGGGGGSGPAAVSEFNNYYGSAAPASGGPGGRTGPCFDQHGGQQSPGMGMM
HSAAAAAGAPNSMDPLQNSHEGYPNSQYNHYPGYSRPSAGGGGGGGGGGGGGGGGGGGGG
GGGSGGGGGGGGGAGAGAVAAAAAAAAAAAAGGGGGGGGYGGSSSGYGVLSSPRQQGGGM
MMGPGGGGAASLSKAAAGAAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYP
DYSSPSAPPPPPPSQPQSQAAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQR
SHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQ
RYPISIQGRTPGAMGGMQYPQQQMPPQYGQQGVSAYCQQGQQPFYNQQPPPPHLPPQAQY
LPAQAQQRYPPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPVEVLTSEDTA
FGLKDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGP
SPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSPHPALSQSPMSQERGFMAG
TQRNPQMSQYGPQQTGPPMSPHPSPGGQMHPGISSFQQSNSSGTYGPQMSQYGPQGNYSR
PPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGAMPLGRMPSAGMQNRPFPGNMSS
MTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRPPYIRSPAYPSQSGA
GGRPMFSSQHPNYGNSQAPMMHQPDQYGQGSFPGMNQSGLMASSSPYSQPVNNSSGLMNT
QAPPYSMTPNMVNSSAASMGLADMMSPGDSKLPVPLKADGKEEGTPQPESKSKDSYSSQG
ISQPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITK
VYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKN
KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTTDTKKQPKLQ
PPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTPMQGGRSSTVSVHDP
FSDASDSSFPKRNSMTPSTPYQQGLSMPDVMGRMPYEPNKDPFGGMRKVPGSSEPFMTQG
QMPTSSMQDMYNQSPSGAMSSLGMGQRQQFPYGAGYDRRHEPYGQQYPGQGPPSGQPPYG
GHQPGLYPQQPNYKRHMDGMYGPPAKRHEGDVYNMQYGGQQQELYSQYGGSYSGPDRRPL
QGQYPYPYNRERMQGPAQMQPHAIPPQMMGGPMQSSSSEGPQQSMWATRNDLPYPYQSRQ
GPGGPGQAPPYPGMNRTDDMMVPDQRINHESQWPSHVSQRQPYMSSPASMQPITRPPQSS
YQTPPSLPNHVSRAPSPASFQRSLESRMSPSKSPFLPSLKMQKVLPTVPTAQVTGPPPQP
PPIRREITFPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTIN
ILLYDDSTVATFSLSQLSGFLELLVEYFRKCLIDIFGILTEYEVGDPSQKALDHNAVKRD
DSQSWADDPGKEEEDAGCVEEEEGDEEDEDDEEDDSGKTETEEKSGAALASPNAPADAKE
KPRQASKFDKLPIKIVKKNNLFVVDRSDKLGRVQEFSSGLLHWQLGGGDTTEHIQTHFES
KMEIPPRRRPPPPGSSTGRKKEQEGRGEADEQQEKSIIATIDDVLSARPGALPEDAHPGT
QTESSKFPFGIHQAKSHRNIKLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLS
FVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDC
LEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVL
SPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLS
NLAQGDALAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLLHMQPPPLEPPSVDMMC
RAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7362 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgggcagcagcggcggcggcggcggcggcgcgggcgcgggcgggcagcggc
gagcggcgggcgccccccgggccgcggccggcgcccggggcccgggacctggaggcgggg
gcgcgcggcgcggcggcggcggcaccgggacccatgctggggggcggcggcgacggcggc
ggcctgaataatgtgcaccaccaccccctgcacccccgtcacgaactgaacatggcccat
aacgcgagcacggcggccgccgccgccagcacgaacagcgccaagagcggcggctccgag
gcggctctcaaggagggtggaagcgccgccgcgctgtcctcctcctcctccgcggcggcg
gcggcggcgtcctcctcttcctcctcgtcgggcccgggctcggttatggagacggggctg
ctccccaaccacaaactgaaaaccgttggcgaagcccccgccgcaccgccccaccagcag
caccaccaccaccaccatgcccaccaccaccaccaccatgcccaccacctccaccaccac
caccacgcactacagcagcagctaaaccagttccagcagcagcagcagcagcagcagcag
cagcagcagcagcaacagcagcagcagcagcagcagcaacagcagcagcagcaacatccc
atttccaacaacaacagcctcggcggcgcgggcggcggcgcggctcagccgggtcccgac
atggagcagccgcaacatggaggcgccaaggacagtgccgcgggcagccaggccgacccc
ccgggccagcctctgctgagcaagccgggcgacgaggacgacgcgccgcccaagatgggg
gagccggcgggcggccggttcgagcacccgggcctgggcgccctgggcgcgcagcagccg
ccggtcgccgtgcccgggggcggcggcggcggtggcggcggcggcagcggcccggcagcc
gtctcggagtttaataattactatggcagcgctgcccctgctagcggcggccccggcggc
cgcactgggccttgctttgatcaacatggcggacaacaaagccccgggatggggatgatg
cactccgccgcagccgccgccggagcccccaacagcatggaccccctgcagaactcccac
gaagggtaccccaacagccagtacaaccattatccgggctacagcaggcccagcgcgggc
ggcggcggcggcggcggcggcggtggaggaggaggaggaggaggaggaggaggaggagga
ggaggaggcagcggaggaggaggaggaggaggaggaggagcaggagcgggagctgtggcg
gcggcggccgcggcggcggcggcagcagcagcaggaggcggcggcggcggcggcggctat
gggggctcgtcctcggggtacggggtgctgagctccccccggcagcagggcggcggcatg
atgatgggccccgggggcggcggggccgcgagcctcagcaaggcggccgccggcgcagcg
gctgggggcttccagcgcttcgccgggcagaaccagcacccgtcgggggccactccgacc
ctcaaccagctgctcacctcgcccagccccatgatgaggagctacggcggcagctacccc
gactacagcagccccagcgcgccaccgccgccgccgccgtcgcagccccagtcccaggcg
gcggcggcggcgggggcggcggcgggcggccagcaggcggccgcgggcatgggcttgggc
aaggacatgggcgcccagtacgccgctgccagcccggcctgggcggccgcgcaacaaagg
agccacccggcgatgagccccggcacccccggcccgaccatgggcagatcccagggcagc
ccaatggatcccatggtgatgaagagacctcagttgtacgggatgggcagtaaccctcat
tctcagcctcagcagagcagcccttacccaggaggctcctacggccccccaggcccacag
cggtatccaataagcatccagggtcggacccccggggccatgggaggaatgcagtaccca
cagcagcagatgccccctcagtacggacagcagggggtgagcgcctactgccagcagggc
cagcagcctttctacaaccagcagccgccgcctccgcacctccccccgcaggcccagtac
ctgccggcccaggcccagcagaggtacccgccgcagcaggacatgtctcaggaaggctat
ggaactaggtctcaacctcctttggctcctggaaaacctaaccatgaagacttgaacttg
atacaacaagaaagaccatcaagtttaccagttgaagtcttgacctcggaggataccgcc
tttggactcaaggacctgtctggctccatcgatgacctccccacgggaacagaggcaact
ctgagctcagcagtcagtgcgtctggatccacgagcagccaaggggatcagagcaacccg
gctcagtcacctttctctccacacgcatccccccatctctccagcatccctgggggccca
tcgccttctcccgtcggctctcctgtgggcagcaaccagtcccgatctggcccgatttct
cctgctagtattccaggcagtcagatgcctcctcagccacccgggagccagtcagaatcc
agcccccatcctgccttgagccagtcaccaatgtcacaggaaagaggttttatggcaggc
acacaaagaaacccccagatgtctcagtatggacctcaacagacaggaccacccatgtcg
cctcatccttctcctggaggccagatgcatcccggaatcagtagctttcagcagagtaac
tcaagtgggacttacggtccacagatgagccagtatggaccacaaggtaactactccaga
cccccaacgtatagcggggtgcccagtgcaagctacagcggcccggggcccggcatgggc
atcaatgccaacaaccagatgcatggacaagggccaagccagccatgtggtgctatgccc
ctgggacgaatgccatcagctgggatgcagaacagaccatttcctggaaatatgagcagc
atgacccccagttctcccggcatgtctcagcagggagggccaggaatggggccgccgatg
ccaaccgtgaaccgtaaggcacaggaggcagccgccgcagtgatgcaggccgctgcaaac
tcggcccagagcaggccaccatacattaggtcgcctgcttatcccagccagtctggggct
gggggacgccccatgttttcttcccagcaccccaactatggcaactctcaggctcccatg
atgcaccagcctgaccagtacgggcaaggcagttttcccggcatgaatcagagtggactt
atggcttccagctctccctacagccagcccgtgaacaacagctctgggctgatgaacacc
caggcccccccctacagcatgacgcccaacatggtgaacagctcagcagcatctatgggt
cttgcagatatgatgtctcccggggactccaagctgcccgtgcccctcaaggccgacggg
aaagaagaaggcactccgcagcccgagagcaagtcgaaggatagctacagctctcagggt
atttctcagcccccaacccccggcaacctgccagtcccttccccaatgtcccccagctct
gctagcatctcctcatttcatggagatgaaagcgatagcattagcagcccaggctggcca
aagactccatcaagccctaagtccagctcttccaccaccactggggaaaagatcacaaag
gtgtatgagttggggaatgagccagagagaaagctatgggtggacagatacctcaccttc
atggaagagagaggctcgcccgtctcgagtctgcctgccgtgggcaagaagcccttggac
ctgttccggctctacgtctgcgtcaaagagatcggaggtttggcacaggttaataaaaac
aagaagtggcgtgagctggcaaccaacctaaatgttggcacttcaagcagtgcggcaagc
tccctgaaaaagcagtatattcagtacctgtttgcctttgagtgcaagatagagcgtggg
gaggagcccccgccggaagtcttcagcacgacggacaccaagaagcagcccaagctccag
ccgccctctcctgctaactcaggatccttgcaaggtccacagaccccccaatccactggc
agtaactcgatggcagaagttccaggtgacctgaagcccccgaccccagcttccacccct
catggacagatgaccccgatgcaaggtggaagaagcagcacggtcagtgtgcacgacccg
ttctctgacgccagcgactcgtcgttcccgaagcggaactccatgactccgagcaccccc
taccagcagggcttgagcatgccggacgtgatgggaaggatgccctacgaacccaacaag
gaccccttcggtggaatgagaaaagtgcctggaagtagtgagccctttatgactcaagga
cagatgcccactagcagtatgcaggacatgtataaccaaagtccctctggagcgatgtcc
agtctgggcatggggcagcggcaacagtttccctatggagccggttacgatcgaaggcat
gaaccttatgggcagcagtacccaggccaaggccctccctcaggacagccgccatatgga
ggacaccagcccggcctgtatccgcagcagccgaattacaaacgccatatggacggcatg
tacgggcctccagccaagcggcacgagggagacgtgtacaacatgcagtacggcggccag
cagcaggagctgtacagccagtacgggggctcctactcgggcccggacaggaggcccctg
cagggccagtatccgtacccctacaacagggagcggatgcagggcccggcgcagatgcag
ccgcacgccatcccgccgcagatgatgggcggcccgatgcagtcgtcctccagcgagggg
ccgcagcagagcatgtgggcgacgcgcaacgacctgccttacccctaccagagccggcag
ggccccggcggccccggccaggcgccgccctacccaggcatgaaccgcacggatgatatg
atggtacccgatcaaaggatcaaccacgagagccagtggccttctcacgtcagccaacgt
cagccttacatgtcctctcccgcctccatgcagcccatcacgcgcccgcctcagtcatcc
taccagacgccgccgtcactgccaaaccacgtctccagagcccccagccccgcctccttc
cagcgctccctggagagccgcatgtcccccagcaagtctccctttctgccctctctgaag
atgcagaaggtcctgcccaccgtccccacggcccaggtcacggggccgcccccccagccg
ccccccatccggagggagatcacctttccccctggctccgtcgaggcatcgcagccagtc
ttgaaacaaaggcgaaagattacctcaaaagatatcgttactcctgaggcctggcgtgtg
atgatgtcccttaagtcaggtctcctggctgaaagtacttgggctctggacactattaac
atcctcctgtacgatgacagcaccgtcgccaccttcagtctctcccagttgtccggattt
ctcgaacttttagtagagtactttagaaaatgcctaattgacatttttgggattcttacg
gaatatgaggtgggcgaccccagccaaaaagcacttgatcacaatgcggtgaagagagac
gacagccagtcgtgggccgacgatcccgggaaggaggaggaagatgccgggtgtgtcgag
gaggaggagggcgacgaggaggacgaggacgacgaggaggacgacagtgggaagacagag
acggaggagaagagcggcgccgctctggcctctcccaacgcccccgcagatgccaaggag
aagcccaggcaagcgagtaagttcgacaagctgccgataaagatagtcaagaagaacaac
ctgttcgtggtcgaccggtccgacaagctgggccgcgtgcaggagttcagcagcgggctt
ctgcactggcagctcggcgggggggacaccaccgagcacatccagactcactttgagagc
aagatggaaatccctcctcggcggcgtccgccgccccccgggagctccacgggcaggaag
aaagagcaggaaggcagaggcgaggctgacgagcagcaggagaagagcatcatcgcgacc
atcgacgacgtcctgtccgctcggccgggggcgctgccggaagacgcgcaccccggtacc
cagaccgagagcagcaagttcccgttcgggatccaccaagccaaaagtcaccggaacatc
aagctgctggaggacgagccccggagccgagacgagactcctctgtgcaccatcgcgcac
tggcaggattctctggccaagcgctgcatctgtgtgtccaatattgtccgtagcttgtct
tttgtgcctggcaacgacgccgaaatgtccaaacatccaggcttggtgctgatcctgggg
aagctgatcctccttcaccacgagcatccggagagaaagcgagcgccgcagacctacgag
aaggaggaagacgaggacaagggggtggcctgcagcaaggatgagtggtggtgggactgc
ctggaggtcttaagggacaacacgctggtcacgctggccaacatttccgggcagctagac
ttgtctgcttacacagaaagcatctgcttgccgattttggatggcttgctgcactggatg
gtttgcccgtcggcagaggcacaagacccctttcccacggtgggacccaactctgtcctg
tcgcctcagagactcgtgctggagaccctctgcaaactcagcatccaggacaataacgtg
gacctgatcttggccacgcctccatttagtcgtcaggagaaattctatgctacgttagtt
aggtacgtgggagatcgcaaaaacccagtctgtcgagaaatgtccatggcgctcttatcg
aacctggcccaaggggacgcgctggcagcacgggcaatagctgtgcagaaagggagcatt
ggaaacttgataagcttcctagaggacggggtcaccatggcccagtaccagcagagccag
cacaacctcctgcacatgcagcccccgcctctagaaccgccgagcgtggacatgatgtgc
agggcggccaaggctctgctggccatggccagggtggacgagaaccgctcggagttcctc
ctgcacgagggccggttgctggacatctcgatatccgccgtcctgaactctctggtcgcg
tctgtcatctgtgacgtactgtttcagatcgggcagttatga
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integrated database retrieval system
