Neogale vison (American mink): 122903207
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Entry
122903207 CDS
T08764
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03082
ATP-dependent chromatin remodeling
nvs03250
Viral life cycle - HIV-1
nvs04714
Thermogenesis
nvs05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122903207 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122903207 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
122903207 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
122903207 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nvs01009
]
122903207 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvs03021
]
122903207 (SMARCB1)
03036 Chromosome and associated proteins [BR:
nvs03036
]
122903207 (SMARCB1)
Protein phosphatases and associated proteins [BR:
nvs01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122903207 (SMARCB1)
Transcription machinery [BR:
nvs03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122903207 (SMARCB1)
SWI/SNF complex
122903207 (SMARCB1)
Chromosome and associated proteins [BR:
nvs03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122903207 (SMARCB1)
PBAF complex
122903207 (SMARCB1)
SWI/SNF complex
122903207 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
122903207
NCBI-ProteinID:
XP_044099732
UniProt:
A0A8C7BV45
LinkDB
All DBs
Position
3:213874244..213911718
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcctgtcaagttccaactggag
gacgatggcgagttctacatgatcggctctgaggtgggaaactacctccgtatgttccga
ggttctctgtacaagagatacccctcgctctggaggcgactagccactgtggaagagagg
aagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcacggc
tacacgaccctggccaccagcgtgacactgttaaaagcctcagaggtggaagagattctt
gacggcaatgacgagaagtacaaggcggtgtccatcagcacggagccccccacctacctc
agggaacagaaagccaagaggaacagtcagtgggtgcccaccttgcccaacagctcccac
catctggacgctgtgccctgctccacgaccatcaacaggaaccgcatgggccgggacaag
aagagaaccttccctctgtgctttgatgaccatgacccagctgtgatccatgagaacgca
tcccagcctgaggtgctggtccccatccggctggacatggagattgacgggcaaaagctg
cgagatgcctttacctggaacatgaatgagaagctgatgacccctgagatgttttcagaa
atcctctgtgatgacctggatttgaacccgctgacatttgtgccagccatcgcctctgcc
atcagacaacagatagaatcttatcccacggacagcatcctggaggaccagtcagatcag
cgtgtcatcattaagctgaacatccacgtgggaaacatttcactggtggaccagtttgag
tgggacatgtcggaaaaggagaactcaccagagaaatttgccctgaagctgtgctcggag
ctggggctgggcggggagttcgtcaccaccattgcctacagcatccggggacagctgagc
tggcatcagaagacctatgccttcagtgagaaccccctacccacggtggagattgccatc
cggaacacaggggatgctgaccagtggtgcccgctgctggagactctgacagatgccgag
atggaaaagaagatccgcgaccaggacaggaacacgaggcgtatgaggcgtcttgccaac
actgccccagcctggtaa
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