Neogale vison (American mink): 122903427
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Entry
122903427 CDS
T08764
Symbol
ATXN2
Name
(RefSeq) ataxin-2 isoform X1
KO
K23625
ataxin 2/2L
Organism
nvs
Neogale vison (American mink)
Pathway
nvs05014
Amyotrophic lateral sclerosis
nvs05017
Spinocerebellar ataxia
nvs05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
122903427 (ATXN2)
05017 Spinocerebellar ataxia
122903427 (ATXN2)
05022 Pathways of neurodegeneration - multiple diseases
122903427 (ATXN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvs03019
]
122903427 (ATXN2)
Messenger RNA biogenesis [BR:
nvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122903427 (ATXN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
122903427
NCBI-ProteinID:
XP_044100199
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All DBs
Position
3:233099911..233214168
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AA seq
1144 aa
AA seq
DB search
MSLKPQQQQQQQQQQQQQQPPPAAANARKPGGSGGLLTSPAAAPSPSSVSSSSAVASSSS
AAASAGGGRPGLGRGRNSKGLTQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYE
GVFKTYSPKCDLVLDAAHEKSMESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYARRD
AFTDSAISAKVNGEHKEKDLEPWDAGELTTTEELEALENDVSNGWDPNDMFRYNEENYGV
VSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKY
TAVQRNSSEREGHSINTRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSH
TSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSR
PSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVS
HTPPSEAAAPPAARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPGGPVLASPQ
AGIIPAEAVAMPVPAASPTPASPASNRAVTPSIEAKDSRLQDQRQNSPAGNKENVKPNET
SPSFSKTENKGISPIVSEHRKQIDDLKKFKNDFRLQPSSTSESMEQLLNKNREGEKSRDL
IKDKIEPNAKDSFIENSSSNCTSSSSKPNSPSISPSILSNTEHKRGPEVTSQGVQTSSPG
CKQEKDDKEEKKDAAEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGH
QQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQD
QHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPV
IQGNARMMAPPAHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSL
AQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQ
QSAIYHAGLAPTPPSMTPASNTQSPQNSFPTAQQTVFTIHPSHVQPAYTNPPHMAHVPQA
HVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHH
QQQL
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgaagccccagcaacagcaacagcagcagcagcagcagcagcagcagcagccg
ccgcccgcggccgccaatgcccgtaagcccggcggcagcggcggccttctcacgtcgccc
gccgccgcgccgtcgccgtcctcagtctcgtcgtcctcggcggtggcttcctcctcctcg
gcggcggcgagcgcaggcggcgggcggcccggcctgggcagaggtcgaaacagcaaagga
ctgactcaatccacaatttcttttgatggaatctatgcaaatatgaggatggttcatata
cttacatcagttgttggatccaaatgtgaagtacaagtgaaaaacggaggtatatatgaa
ggagtttttaaaacatacagtcctaagtgtgatttggtacttgatgctgcacatgagaaa
agtatggaatccagttcggggccaaaacgtgaagaaataatggaaagtattttgttcaag
tgttcagactttgttgtggtacagtttaaagatatggactccagttatgcaagaagagat
gcttttactgactctgctatcagtgctaaagtgaatggtgaacacaaagagaaggacctg
gagccctgggatgcaggtgaactcacaactactgaggaactggaggctttggaaaatgat
gtatctaatggatgggatcccaatgatatgtttcgatataatgaagaaaattatggtgta
gtgtctacatatgatagcagtttatcttcatatacggtacccttagaaagggataactca
gaagaatttttaaaacgagaagcaagggcaaaccaattagcagaagaaattgaatcaagt
gcccagtacaaagcccgggtggccctggaaaatgatgataggagtgaagaagaaaaatac
acagccgttcagagaaattccagtgaacgtgagggccacagcataaacactagggaaaat
aaatatattcctcctggacaaagaaatagagaagtcatatcctggggaagtgggagacag
aattcaccgcgtatgggccagcctggatcgggctccatgccgtcaagatccacctctcac
acttcagatttcaacccgaattctggttcagaccaaagagtagttaatggaggtgttccc
tggccatcgccttgcccatctccttcctctcgcccaccttctcgctaccagtcaggtccc
aactctcttccacctcgggcagccacccctacacggccgccctccaggcccccctcgcgg
ccatccagacccccgtctcacccctctgctcatggttctccagctcctgtctctactatg
cctaaacgcatgtcttcagaagggcctccaaggatgtccccaaaggcccagcgacaccct
cgaaatcacagagtttctgctgggaggggttccatttccagtggcctagaatttgtatcc
cataccccaccaagtgaagcagctgctcctccagcagcaagaactagtcctgcggggggc
acatggtcatcagtggtcagcggggttccaagattatcccctaaaactcataggcccagg
tctcccagacagaacagtattggaaatactcctggtgggccagttcttgcttctcctcaa
gctggtattattccagctgaagctgttgctatgcctgttccagccgcgtctcctacacct
gccagtcctgcatccaacagagctgtcaccccgtctattgaggctaaggattccaggctt
caagatcagaggcaaaattctcctgcagggaataaagaaaatgtgaagcccaatgagaca
tcacctagcttctcaaagactgaaaataaaggtatatcaccaattgtttctgaacataga
aagcagattgatgacttaaagaagtttaagaatgattttaggttacagccaagttctact
tctgaatctatggagcaactgctaaacaaaaatagagagggagaaaaatcaagagatttg
atcaaagacaaaattgaaccaaatgctaaggattctttcattgaaaatagcagcagcaat
tgcaccagtagcagcagcaaaccgaacagtcccagcatttccccttcaatcctcagtaac
acggagcacaagaggggacctgaggtcacatcccaaggggttcagacttccagtccagga
tgtaaacaagagaaggatgataaagaggagaagaaagatgcagccgagcaagtgagaaaa
tcaactttgaatcctaatgcaaaagagttcaaccctcgttccttttctcagccaaagcct
tctacaaccccaacttcacctcgtcctcaagcacagcccagcccatccatggtgggccac
caacagccagctccagtttacacgcagcctgtttgttttgcaccaaatatgatgtatcca
gtcccagtgagcccaggcgtgcaacctttataccctatacctatgacgcccatgccagtg
aatcaagccaagacatatagagcaggtaaagtaccaaatatgccccagcagcggcaggac
cagcatcatcagagcactatgatgcacccagcgtctgcggcgggcccaccgattgtggcc
accccaccagcttattccacacaatatgttgcctatagtcctcagcagtttccaaatcag
cctctcgttcagcatgtgccacactatcagtctcagcatcctcatgtctatagccctgtg
atacagggtaacgctagaatgatggcgccgccggcacacgcccagcctggtttagtgtct
tcttcagcaactcagtatggggctcatgagcagacgcatgcgatgtatgcatgtcccaaa
ttaccatacaacaaggagacaagcccttctttctactttgccatttccactggctccctt
gctcagcagtatgcgcaccctaatgctaccctgcacccacatactccacatcctcagcct
tcagctacccccaccggacagcagcagagccagcacggtggcagtcatcctgcacccagt
cctgttcagcaccatcagcaccaggccgcccaggcgctccatctggccagtccacagcag
cagtctgccatttaccacgcggggctcgcaccaaccccaccttccatgacccctgcctcc
aatacgcagtcgccacagaatagtttcccaacagcacaacagaccgtctttacaatccat
ccttctcacgttcagccggcatacaccaatcctccccacatggcccacgtacctcaggct
catgtacagtcaggaatggttccttctcatccaactgcccatgcgccaatgatgctaatg
acgacacagccacccggcggtccccaggccgccctcgctcaaagtgcactacagcccatt
ccagtctcgacaacagcgcatttcccctatatgacgcacccttcagtacaagcccaccac
caacagcagttgtaa
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