Neogale vison (American mink): 122905434
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Entry
122905434 CDS
T08764
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03018
RNA degradation
nvs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122905434 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
122905434 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvs03019
]
122905434 (LSM8)
03041 Spliceosome [BR:
nvs03041
]
122905434 (LSM8)
Messenger RNA biogenesis [BR:
nvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122905434 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
122905434 (LSM8)
Spliceosome [BR:
nvs03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122905434 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Alpha_E1_glycop
Motif
Other DBs
NCBI-GeneID:
122905434
NCBI-ProteinID:
XP_044102953
LinkDB
All DBs
Position
4:<199710184..199717013
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AA seq
144 aa
AA seq
DB search
LTGSLRRCNSRDKCCRQSAGAAAGSWRAFLAAVGASVPVLFRAAGQSIMTSALENYINRT
VAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGE
IDEETDSALDLGNIRAEPLNSVAH
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
ctcactggctcgctgcgacgctgtaactctcgcgataagtgctgccgccagtcggcggga
gccgctgccggttcctggcgggcctttctagctgcagttggcgctagtgttcctgtgttg
ttcagagctgccgggcagagcatcatgacgtccgccttggaaaactacatcaaccgaact
gttgcagttataacttctgatggaagaatgattgtgggaacactgaaagggtttgaccag
accattaatttgattttggatgaaagccatgaacgagtgttcagctcttcacagggagta
gaacaagtggtgctggggttatacatcgtaagaggtgacaatgttgcagtcattggagaa
attgatgaagagacagattctgcacttgacttggggaatattcgagcagaacctctaaac
tctgtagcacactga
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