Neogale vison (American mink): 122906083
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Entry
122906083 CDS
T08764
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122906083 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nvs03041
]
122906083 (DDX42)
Enzymes [BR:
nvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122906083 (DDX42)
Spliceosome [BR:
nvs03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122906083 (DDX42)
Complex B
122906083 (DDX42)
Complex C
U2 SnRNP specific factors
122906083 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
122906083
NCBI-ProteinID:
XP_044103578
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All DBs
Position
5:complement(14819471..14861463)
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AA seq
955 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEESKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPESPIASATKGIPGFGNTGNLSSAPVTY
PSPGAQGVNSTASGNNSREGPGGGNGKRERYTENRGGSRHGHGESGNRHGDSPRHGDGGR
HGDGYRYPESSSSSSSSSSSSRHADGHRHGENRHGGGGGRHGESRGAGESRGAGESRGAN
DGRNGESRKEACNRESKVDPKVDSKMDKVDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggaaccaaaaggggatttggctttggaggttttgct
attagcgctggaaagaaggaggaatccaaactcccacagcagtcccacagtgcctttggg
gcaaccagctcttcttctggatttggaaagtcagctccgccacagctcccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagactctagcaatgttgatttaccttacattcctgctgaaaactcgcctacccgccag
cagttccattccaagccggcagattctgacagtgatgatgatcccttggaggcgttcatg
gctgaagtggaggatcaggcggctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttac
tttcggtacatggcagagaacccaactgctggtgtggttcaggaggaagaagaagataat
ttggaatatgacagtgatggaaatcccattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcggagattgactatccaccatttgaaaaaaatttttacaacgag
catgaagagataaccaacctcacccctcagcagctaatagatctccgtcataagctcaat
cttcgggtctctggtgctgcacctcctagaccgggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agtgggaaaactgcagcttttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggagatggaccaatcgcagtgatcgtgtgtcctactagggagctctgccag
cagatccatgcagaatgtaagcggtttgggaaagcgtataatcttcgatcggttgccgta
tatggaggaggaagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggacgactaattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgcatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtccgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaaactggccagagacatcctgatcgaccctattcgtgtggtg
cagggagacattggagaggcaaatgaagatgtgacacagattgtggaaattctccattct
gggcctagtaaatggaactggcttacccggcgtctggtagaatttacctcttcaggaagt
gttctcctgttcgttactaaaaaagccaatgccgaggagctagccaataaccttaagcag
gagggtcataatcttgggctgcttcatggggacatggatcagagtgaaagaaacaaggtc
atttcagactttaagaaaaaggacatcccagtcctggtggccacagatgttgcagctcgt
ggtctggacattccttcaattaagactgtcattaactatgacgtggcacgagacattgat
actcatactcacaggattggccgcacaggacgagcaggtgagaaaggtgtggcctatacc
ttgctgactcccaaggacagtaattttgctggtgacctcgtccggaacttggaaggagcc
aatcagcatgtttccaaggaactcctcgatctggcgatgcagaatgcctggtttcggaaa
tcccgctttaaaggaggaaaaggcaaaaagctgaacattggtggaggcggccttggctac
agggagcggcctggcctaggctcagagaacacggaccgaggcaacaacaataacgtgatg
agcaattacgaggcctacaagccctccacaggagccatgggagatcggctgacggcaatg
aaagcggctttccagtcacagtacaagagtcactttgttgctgccagcttaagcaaccag
aaggcgggaagctctgctgctggggcaagtggatggactagtgcagggagcttgaattct
gttccaactaattcagcccaacagggccataacagtccagaaagccccattgccagtgcc
accaagggtatcccaggctttggcaatactgggaacctcagcagcgctccagtgacctac
ccttctcctggagcacagggagtcaacagtacagcttcagggaataacagccgagaaggg
cctgggggaggcaatgggaagagagagagatacacggagaaccggggtggcagccgtcat
ggtcatggagagagtggcaatcggcatggtgacagtccacgtcatggagatggtggtcgc
catggagacggataccgctacccagaaagcagcagcagcagcagcagcagcagcagcagc
agccgtcatgctgatggtcaccgtcacggggagaacaggcatggaggaggtggcggtcga
cacggagagagccgaggtgcaggagagagccgaggtgcaggagagagccgaggtgcaaac
gatggtcggaatggtgaaagcaggaaagaggcttgtaatcgtgagagtaaggtggacccc
aaagtggacagcaagatggacaaggtggacagcaagacagataagacagccgatggtttt
gctgtccccgagccacccaagcgcaagaaaagccgatgggacagttag
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