Neogale vison (American mink): 122906203
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Entry
122906203 CDS
T08764
Symbol
DHX58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122906203 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
nvs04054
]
122906203 (DHX58)
Enzymes [BR:
nvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122906203 (DHX58)
Pattern recognition receptors [BR:
nvs04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
122906203 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
Helicase_C
ResIII
DEAD
SWI2_SNF2
AAA_19
AAA_22
Terminase_6N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122906203
NCBI-ProteinID:
XP_044103856
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All DBs
Position
5:20310867..20318842
Genome browser
AA seq
679 aa
AA seq
DB search
MELRPYQWEVIMPALEGKNIIVWLPTGAGKTRAAAYVAKRHLETVDRAKVVVLVNRVHLV
SQHCEEFSRMLDRRWAIITLSGDMGPRAGFGHLARSHDLIICTAELLQMALTSPEEEEHV
ELNAFSLLVVDECHHTHKDTVYNVILSRYLEHKLQRTRPLPQVLGLTASPGTGGASTLKG
AIDHILQLCANLDTWRIMSPQTYRPQLQELRPQPCKQYNLCHRRTQDPFGDTLKKLMDQI
HNRLEMLELSRDFGTQNYEQQVVELSQAAAEAGLLERRVYALHLRRYNDALLIYDTVRAV
DALDWLRDFYYKERATKTQILQAERWLLALFDDYKNELAHLATCSPENPKLEMLEQILRE
QFGGSDDSPRGIIFTQTRQSVHSLLLWLQQQPGLQTMDIRADMLIGAGNSSQNTHMTQRD
QQEVIRKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGRARAGQSKY
SFVATQGSRELRRELTNEVLEKLMERAVAAVQEMDEAEYQAKIRDLQRGALVKRAARAAQ
RESQRQQFSAEEVQLLCVNCMVAVGHGSDLRKVEDAHHVNVNPNFSIYYSVSRGAVVIDR
TFKDWKPGGTIHCRNCGEAWGLQMIYKSVKLPALRVRSMLLQTPQGRVQAKKWSRVPFPV
PDFDYLQHCTQNLADLSLE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagttgcgaccctaccagtgggaggtaatcatgcctgccctggagggcaagaatatc
atcgtgtggctgcccacgggggctgggaagacccgggcggctgcgtacgtagccaagagg
catctggagactgtggacagagccaaggtggtggtactagtcaacagggtgcacctggtg
agccagcattgtgaggagttcagccgcatgctggacagacgctgggccattataaccctg
agcggggacatggggccacgagctggctttggccacctggcccggagccatgacctgatc
atctgcacagcggagctgctccagatggcgctgaccagccccgaggaggaggagcacgtg
gagctcaatgccttctccctgctcgtggtggatgagtgtcaccacacgcacaaagacact
gtctacaatgtcatcctgagccggtacttagagcataaactccagaggacacggcccctg
ccccaggtgctggggctcacagcctccccaggcactggcggggcctccacactcaagggg
gccatcgaccacatcctgcagctctgtgccaacctggacacatggcgcatcatgtcaccg
cagacctaccgcccccagctgcaggagctcaggcctcagccctgcaaacagtacaacctc
tgccacaggcgcacccaggacccatttggggacacactgaagaaactcatggaccaaatc
cacaaccgcctggagatgctcgagttgagccgggacttcgggacgcagaattacgagcag
caggtggtggagctgagccaggctgcggccgaggccgggctcctggagcgccgggtctat
gctcttcacctgcggcgctacaacgatgcgctgctcatctacgacacggtccgtgctgtg
gacgccctggactggctgcgggatttctactacaaggagcgcgccacgaagacccagatc
ctgcaggccgagcgctggctgctggcgctgttcgatgattacaagaatgagctggcccac
ctggcaacatgcagcccggagaacccaaaactggagatgctagaacagatcctgcgggag
cagtttgggggcagcgacgacagcccccggggcatcatcttcacgcagacccgccagagc
gtccactccctcctgctctggctccagcagcagccgggcctgcagaccatggacatcagg
gctgacatgctgatcggggcggggaacagcagccagaacacccatatgacccagagagac
cagcaagaagtgatccggaagttccggactggcaccctgaacctcctggtggccacgagt
gtggcggaagagggactggacatcccccagtgcaacgtggtggtgcgctacgggctcctg
accaatgagatctccatggtccaggccaggggccgtgcccgggctggtcagagcaaatac
tcgtttgtggcaacccaaggcagtcgggagctgcggcgggagctgaccaatgaggtgctg
gagaagctgatggagcgggccgtggctgccgtgcaggagatggacgaggccgagtaccag
gccaagatccgggacctgcagcggggcgctctggtcaagcgggcggcccgggcagcccag
agggagagtcagcggcaacagttctcagccgaggaggtgcagctcctctgtgtcaactgc
atggtggccgtgggccatgggagtgacctgcggaaggtggaggacgcccaccacgtcaac
gtgaaccccaacttctcgatctactacagtgtctcccggggggctgtggtcattgacaga
accttcaaggactggaagcctgggggtaccattcactgcaggaactgtggcgaggcctgg
ggtttgcagatgatctacaagtcggtgaagctgccggcactccgggtccgcagtatgctt
ctacagacgccccaggggagagtccaggccaagaagtggtcccgcgtgcccttcccagtg
cctgactttgactacctgcagcactgcacccagaacctggcggacctctccttggaatga
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