Neogale vison (American mink): 122906340
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Entry
122906340 CDS
T08764
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03030
DNA replication
nvs03420
Nucleotide excision repair
nvs03430
Mismatch repair
nvs03440
Homologous recombination
nvs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122906340 (RPA1)
03420 Nucleotide excision repair
122906340 (RPA1)
03430 Mismatch repair
122906340 (RPA1)
03440 Homologous recombination
122906340 (RPA1)
03460 Fanconi anemia pathway
122906340 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nvs03000
]
122906340 (RPA1)
03032 DNA replication proteins [BR:
nvs03032
]
122906340 (RPA1)
03400 DNA repair and recombination proteins [BR:
nvs03400
]
122906340 (RPA1)
Transcription factors [BR:
nvs03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122906340 (RPA1)
DNA replication proteins [BR:
nvs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122906340 (RPA1)
DNA repair and recombination proteins [BR:
nvs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122906340 (RPA1)
MMR (mismatch excision repair)
122906340 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
122906340 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
A_deaminase
Motif
Other DBs
NCBI-GeneID:
122906340
NCBI-ProteinID:
XP_044104098
LinkDB
All DBs
Position
5:complement(25501291..25576469)
Genome browser
AA seq
616 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVINIRPIITGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEEERLSSNCICQINRFIVNTLKDGRRVVILMELDILKSAEAVGLKIGNPVPYNE
GHGQQQVVPPPVSAANPPASKPQQQNGSSAMGSTASKTYGASKTFGKAGGTSLGNSSGGT
QVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVMPCEDGHHLPTVQF
DFTGIGDLENKPKDSLIDIIGICKSCEDATKITVKSNNREVSKRNIYLMDMSGKMVTATL
WGEDADRFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALDGISISDVKSGGTGGSNTNWKTLYEAKSENLGHGDKADYFSSVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFPSFKYRIILSVNIADFQENQWVTCFQESAEAII
GQSTADLGELKEKNEQAFEEVFQNANFRSFIFRIRVKLETYNDESRIKATVIDVKPVDYK
EYGRRLIMNIRRNALM
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggtgggccacctgagcgagggggccattgcggccataatgcaacagggagatacgtcc
ataaaacccatcctccaagtcattaacatccgtcccattattacagggaatagtccaccc
cgttatcgactgcttatgagtgatggcttgaacactctatcctctttcatgttggcaaca
cagttgaaccctctcgttgaggaagaacgattgtctagcaactgtatttgccagattaac
cgattcattgttaacaccctgaaagatggaaggagagtagttattttgatggagttagac
attttgaaatcagctgaagccgttggattaaagattggcaatcctgtgccctataatgaa
ggacacgggcagcagcaggtagttcctccccctgtctcagcggccaatccaccagccagc
aagccccagcagcaaaatgggagctcagcaatgggttccactgcatctaagacttatggg
gcctcaaagacatttggaaaagctggaggtaccagcctcgggaatagttctggaggaaca
caggtcaaagtggtacccattgccagcctcaccccttaccaatccaagtggactatctgt
gctcgagttaccaacaaaagtcagatccgtacctggagcaattcccgaggggaagggaag
cttttctccatagaactagttgatgaaagtggtgaaatcagagctactgctttcaatgag
caagtggacaagttctttccccttatcgacatgaacaaggtctattatatctctaaaggc
atcctgaagattgctaacaaacagttcacagcggttaaaaatgactacgagatgaccttc
aacaatgagacttctgtcatgccctgtgaagatggtcatcatttacctacagttcagttt
gatttcacagggattggagacctggagaacaagcctaaagactcacttatagacataatt
gggatctgcaagagctgcgaagatgccaccaaaatcacagtgaagtctaacaacagagaa
gtttccaagagaaatatctatttgatggacatgtcagggaaaatggtgactgctactctg
tggggagaggatgctgatagattcgatggttctagacaacccgtgatggctatcaaagga
gctagagtttctgattttggtggacggagcctctctgtactgtcttcaagcacggtcatt
gtgaatcctgacatcccagaggcctataagcttcgtggatggttcgactcagaaggacaa
gccttagatggtatttctatctctgatgtaaagagtggaggaacaggaggaagcaatacc
aactggaaaactttgtatgaggctaaatcagagaacctgggccatggtgacaaggccgac
tatttcagctctgtggcgacggtagtgtatcttcgcaaagaaaactgtatgtatcaggcc
tgcccaactcaggactgcaataagaaagtgattgatcaacagaatggactataccgctgt
gagaagtgcgacagtgaatttcccagcttcaagtaccgcattatcctgtcggtaaatatt
gctgattttcaagagaatcagtgggtcacttgtttccaggagtctgcagaggccatcatt
ggacaaagcactgctgatcttggggagttaaaagagaagaatgaacaagcatttgaggaa
gttttccagaatgccaacttccgatctttcatattcagaatcagggtgaaactagagacc
tacaatgatgagtctcgaattaaggccactgtgatagacgtgaagcctgtagactacaaa
gaatatggcagaaggctgatcatgaacatcaggagaaatgcgctcatgtga
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