Neogale vison (American mink): 122906458
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Entry
122906458 CDS
T08764
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122906458 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nvs03400
]
122906458 (LIG3)
Enzymes [BR:
nvs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122906458 (LIG3)
DNA repair and recombination proteins [BR:
nvs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
122906458 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
122906458
NCBI-ProteinID:
XP_044104338
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All DBs
Position
5:33094287..33115270
Genome browser
AA seq
1001 aa
AA seq
DB search
MCSCMTLTFKILFPSALRALGRKELSLFREQHHWPDRRQFSHWLETDLLDGPCLLQRRKA
ALSFQEGHLRPRATCLVFLPGAHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKG
VCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKE
QISQHIADLSSKATGTPKKKAVVQAKLTATGQVTSPVKGASLVTNSNPRKFSGFSAKPNN
SGAARASPPPEASLSSSRCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLRKGSA
GDGFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIR
VFFEQSKSFPPAAKSLLTIQEVDEFLLRLSRLTREEEQQQALQDIASRCTANDLKCIIRL
IKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGRRRALSVQA
SLMTPVQPMLAEACKSIEHAMKKCPNGMFSEIKYDGERVQVHKNGDHFNYFSRSLKPVLP
HKVAHFKDYIPQAFPGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAAFQDANVCLFVF
DCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKAADLADMINRVIREGLE
GLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGC
YDPSSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPD
PKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKER
ADFTVAAGEEGSSTTGGSSGENQGTLGPAAAHKASRASLKQPSTSAKKAGGRPSSPNSRG
GHQRTVKVGQKRKAPPDETGCPAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQ
EFDMASATHVLGSRDKNPEAQQVSPEWIWACIRKRRLVAPC
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagctgtatgactttgactttcaagatcctcttcccatcagcccttcgcgcactg
gggcgaaaagaactgagcctgttccgagagcaacatcactggcctgacagaagacaattc
agccattggttagaaacagatctgcttgatgggccctgcctcctccagagaagaaaggct
gctctgtcattccaggaaggccatctaagaccacgtgccacctgccttgttttcttgcca
ggggcgcatgtgggactctgcagtggcccctgtgagatggccgagcaacggttctgtgtg
gactatgccaagcgtggcacagccggctgcaaaaagtgcaaggaaaagattgtgaagggg
gtatgcaggatcggcaaagtggtgcccaatcccttttcagagtctgggggcgatatgaaa
gagtggtatcacattaaatgcatgtttgagaaactggagcgggctcgggccaccacaaaa
aaaattgaggacctcacagagctggaaggctgggaagagctggaagacaatgagaaggaa
cagataagccagcacattgcagatctgtcttctaaggcaacaggcacaccaaagaagaaa
gccgtcgtccaggctaagctgacagccactggccaggtgacctctccagtgaaaggtgcc
tcactcgtcaccaatagcaacccccggaaattttctggtttttcagccaagcccaacaac
tctggggcagcccgtgcaagccctccccctgaggcaagtctgtcttcaagcagatgtgac
cccaagcacaaggattgtctgctacgtgagtttcggaagttgtgtgccatggtggctgag
aatcctagctacaacacgaagacccagatcatccaggactttcttcggaaaggttcagca
ggagatggtttccacggtgacgtgtacctaacagtgaagttgctgctgccaggtgttatt
aagagtgtctacaacttgaacgataagcagattgtgaagcttttcagccgcatttttaac
tgcaacccagatgatatggcacgagacctagagcagggcgatgtgtcagagacaatcaga
gtcttctttgagcagagcaagtctttccccccagctgccaagagcctccttaccatccag
gaggtggacgagttcctccttcggctctccaggctcaccagggaggaggagcagcagcag
gccctgcaggacatcgcctccaggtgcacagccaatgacctcaagtgcatcatcagattg
atcaaacatgatctgaaaatgaactcaggtgcaaagcacgtgttagatgcccttgacccc
aatgcctatgaagccttcaaagcctcacgcaacctgcaggacgtggtggagagggtcctc
cgcaatgagcaggaagtggagaaggagccaggccggagacgagctctgagcgtccaggct
tccctgatgacgccagtgcagcctatgctggctgaggcctgcaagtccatcgagcacgca
atgaagaagtgtcctaatggcatgttttctgagatcaagtacgatggggagcgagtgcag
gtgcataagaacggggaccacttcaactacttcagccgcagcctcaagcctgtcctgcct
cacaaggtggcccacttcaaggactacatccctcaggcttttcctggaggccacagcatg
atcctggactccgaggtgctcttgatcgacacaaagacaggcaaaccgctgccctttggg
actcttggagtgcataagaaagctgccttccaggatgctaatgtttgcctgtttgttttt
gattgtatctacttcaatgatgtcagcctgatggacaggcctctgtgtgagcggcggaag
tttcttcatgataacatggttgaaattcccaaccggatcatgttctcagaaatgaagcaa
gttactaaagctgcagacttggctgacatgatcaaccgggtcattcgagaggggctggaa
gggctggtgctgaaggatgtgaagggtacatatgagcctggaaagcggcactggctgaaa
gtgaagaaagactatttgaacgagggggccatggctgacacagctgacctggtggtcctt
ggggccttctatgggcaagggagcaaaggtggcatgatgtccatctttctcatgggctgc
tatgacccaagcagccagaagtggtgcacggtcaccaagtgtgcagggggccatgatgac
gcaacccttgcccgcctgcagaaggaactggacatggtgaagatcagcaaggatcccagc
aagatacccagctggctgaaaatcaacaagatctactatcctgactttatagtcccagac
ccaaagaaagctgccgtgtgggagatcacaggggctgagttctccaagtctgaggctcat
actgccgacgggatctccatccgattcccacgttgcacccgcatccgtgatgataaggac
tggaaatctgccactaacctcccccaactcaaggaactgtaccagctgtccaaggagaga
gcggacttcacggtggcggccggagaggaggggagctccaccacagggggcagcagtgga
gagaaccagggtaccttggggcctgcggcggctcacaaggcctccagggcctccctgaag
cagccctccaccagtgccaagaaggcaggaggaaggccgagtagccccaacagcagaggc
ggccaccagcggactgtgaaagtggggcagaagcggaaggctcctcctgatgagaccggg
tgcccagcaaaggtgctgctggacatcttcactggggtgcggctctacctgccaccctcc
acaccagacttcagccgtctcagacgttactttgtggcattcgatggggacctggtgcag
gaatttgacatggcctcagccacacatgtgctgggtagcagggacaagaaccctgaggcc
cagcaggtctccccggagtggatttgggcctgcatccggaaacgaaggctggtggccccc
tgctag
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