Neogale vison (American mink): 122906999
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Entry
122906999 CDS
T08764
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03410
Base excision repair
nvs04140
Autophagy - animal
nvs04217
Necroptosis
nvs04613
Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122906999 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122906999 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
122906999 (HMGB1)
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
122906999 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nvs03036
]
122906999 (HMGB1)
03400 DNA repair and recombination proteins [BR:
nvs03400
]
122906999 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nvs04147
]
122906999 (HMGB1)
Chromosome and associated proteins [BR:
nvs03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
122906999 (HMGB1)
DNA repair and recombination proteins [BR:
nvs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
122906999 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
122906999 (HMGB1)
Exosome [BR:
nvs04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
122906999 (HMGB1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
NOA36
HMG_box_5
Nop14
Motif
Other DBs
NCBI-GeneID:
122906999
NCBI-ProteinID:
XP_044105471
LinkDB
All DBs
Position
5:complement(94450315..94459594)
Genome browser
AA seq
215 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgccgggaggaacacaagaagaagcacccagatgcttcagtcaacttctcagag
ttttctaagaagtgctcagaaaggtggaagaccatgtctgctaaagagaaaggaaaattt
gaagacatggcaaaggctgacaaggcccgttatgaaagagaaatgaaaacttatattccc
cctaaaggggaaacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccttcg
gcctttttcttgttttgttctgagtatcgcccaaaaatcaaaggagaacatccaggccta
tccattggtgatgttgcaaagaaactgggagaaatgtggaataacactgctgcagatgac
aagcagccttatgaaaagaaggctgctaagctgaaggaaaaatatgaaaaggatattgct
gcataccgagctaaaggaaagcctgatgctgcaaaaaagggagtcgtcaaggctgaaaag
agcaagaaaaagaaggaagaggaggaggatgaggaagatgaagaggatgaggaggaggag
gaagatgaagaagatgaagatgaagaagaagatgatgatgatgaataa
DBGET
integrated database retrieval system