Neogale vison (American mink): 122907242
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Entry
122907242 CDS
T08764
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
nvs
Neogale vison (American mink)
Pathway
nvs04151
PI3K-Akt signaling pathway
nvs04510
Focal adhesion
nvs04512
ECM-receptor interaction
nvs04820
Cytoskeleton in muscle cells
nvs04926
Relaxin signaling pathway
nvs04933
AGE-RAGE signaling pathway in diabetic complications
nvs04974
Protein digestion and absorption
nvs05146
Amoebiasis
nvs05165
Human papillomavirus infection
nvs05200
Pathways in cancer
nvs05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122907242 (COL4A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122907242 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122907242 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122907242 (COL4A1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
122907242 (COL4A1)
09154 Digestive system
04974 Protein digestion and absorption
122907242 (COL4A1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122907242 (COL4A1)
09162 Cancer: specific types
05222 Small cell lung cancer
122907242 (COL4A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
122907242 (COL4A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
122907242 (COL4A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
122907242 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nvs04147
]
122907242 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
nvs00536
]
122907242 (COL4A1)
Exosome [BR:
nvs04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122907242 (COL4A1)
Glycosaminoglycan binding proteins [BR:
nvs00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122907242 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122907242
NCBI-ProteinID:
XP_044106029
LinkDB
All DBs
Position
5:complement(164526791..164657773)
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AA seq
1669 aa
AA seq
DB search
MVPRLGFWLLLLAAALLLHEERSRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVI
GFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGAAGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGEPGPLGPPGLPGFAGNPGPPGLPGMKGDPGEIIGHVPGTLLKGERGFPGP
PGAPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPP
GVPGQAQVKEKGDFATKGEKGQKGEPGFQGVPGFGEKGEPGKPGPRGKPGKDGEKGEKGS
PGFPGDTGYPGPPGHEGFKGDKGEAGPPGPPGIAIGPGPLGEKGERGYPGAPGLRGEPGP
KGFPGLQGQPGPPGFPVPGQIGAPGFPGERGEKGEQGFPGTSLPGPSGRDGLPGPPGPPG
PPGQPGHTNGIVECQPGPPGVQGPPGIPGQPGLTGEVGEKGQKGDSCLICDTAGLRGPPG
PQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIYFDARLK
GDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDT
GPPGPPGFGLPGPVGDKGQAGFPGNPGSPGQPGPKGEAGKVVPLPGPPGAQGLPGAPGFP
GPQGDRGFPGTPGRPGLPGEKGTVGQPGIGFPGPPGPKGVDGLPGDVGPPGSPGRPGFNG
LPGNPGVPGQKGEPGVGLPGLKGLPGIPGIPGTPGEKGNVGGPGVPGEHGAVGPPGLQGL
RGDPGPPGLQGPRGAPGAPGVGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGPKGEMGVMGTPGQPGSPGPAGLPG
LPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDEVHMGSMKGQKGDQGEKGQTG
PTGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGIGGTPGAPGLPGPKGSVGGMGLPG
TPGEKGVPGIPGPQGVPGLPGEKGAKGEKGHAGLPGIGIPGRPGDKGDQGVTGFPGSPGE
KGEKGSAGIPGVPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGSDGIPGIKGEAGLPGK
PGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGEKGSKGDVGFPGQAGSP
GIPGSKGEQGFMGPPGPQGQPGLPGAPGHAVEGPKGDRGPQGQPGLPGLPGPMGPPGLPG
LDGLKGDKGNPGWPGAPGTPGPKGEPGFQGLPGIGGSPGITGSKGDMGPPGVPGFQGQKG
LPGLQGVKGDQGDQGFPGSRGLPGPPGPPGPYDIIKGEPGLPGPEGPAGVKGLPGPPGPK
GQQGVTGSVGLPGPPGVPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTTDDPQCPPGTKILYHGFSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINDVCNFASRNDYSYWLSTPEPMPMSMAPIAGDNIRPFISRCAVCEAPAMVMAV
HSQTIQIPPCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggtgccccggctcggcttctggctgctgctgctggccgccgccctcctgctccacgag
gagcgcagccgggccgctgcgaagggtggttgtgctggctctggctgtgggaagtgtgac
tgtcatggagtgaagggacagaagggcgaaaggggcctcccggggttgcaaggtgtcatc
gggtttcccgggatgcaaggacccgaggggccgcaggggccaccaggacaaaagggtgac
accggagaacccgggcttcccggaactaaagggacaagaggacccccaggagcagcaggt
taccccggaaacccaggactgccgggtattcctggccaagacggtccccccggtcctcca
ggtatccccggatgcaatggaacaaagggcgagccagggcctctggggcccccgggtttg
cctggattcgccggaaatcccggaccgccagggttgccaggaatgaagggggatccgggt
gaaatcatcgggcatgtgcctgggaccctgttgaaaggtgaaagaggatttcctggaccc
ccaggagcaccaggctcgccgggactgccaggcctgcagggtcctgtgggccctccagga
tttaccggaccaccaggtcctccaggccctcctggccctccaggtgaaaaggggcaaatg
ggcttaagttttcaagggccaaaaggtgataagggtgaccagggggtcagtgggcctccg
ggagtgccgggacaagctcaagttaaagaaaaaggagactttgccaccaaaggagaaaag
ggtcaaaaaggtgaacctggatttcagggagtgccagggtttggagagaaaggggagccc
ggaaagccagggccccgaggaaaacctggaaaagatggcgaaaaaggagaaaaagggagt
ccaggctttccaggtgacacggggtacccgggacccccaggccacgaaggtttcaaggga
gacaagggtgaagcaggtcctccaggcccacctggaattgcaatcggcccaggacccttg
ggagaaaaaggagagcgggggtacccgggcgccccagggttgagaggagagccaggcccc
aaaggtttcccgggactgcaaggccagccaggccctccaggctttccggtaccagggcag
atcggagctcctggattcccaggggaaagaggcgagaaaggtgaacagggctttccgggc
acatctttgccaggaccaagcggacgggatgggctcccgggcccccctgggcctcccggg
ccccctggacagccgggccacacaaatggaatcgtggaatgccagcctgggccgccaggg
gtccagggtccccccggaattccagggcagccagggctgacgggcgaggttggagaaaaa
gggcagaaaggagacagctgcctcatctgtgacacagcaggacttcgtgggccccctggg
ccgcagggtcccccaggagaaataggtttcccgggacagccaggggccaagggcgacaga
ggcttgcctggcagagatggtctggaaggattgcctggcccgcaaggcgcaccagggctg
atgggccagccgggagccaagggagagcctggcgagatttacttcgacgcacggctcaaa
ggagacaaaggagacccaggctttccaggacagcccgggatgccaggcagagcagggtct
cctgggagagacggccatccaggactgcccggccccaaaggctccccggggtccgtagga
ttgaaaggagagcgtggcccccccgggggagttggattccccggcagtcgcggtgacacg
ggccctccagggcctccagggtttggccttcctggccccgttggcgacaaaggacaagcg
ggttttccagggaaccctggctccccaggccagccaggtcccaagggtgaagcaggaaaa
gttgtgcccctaccgggtccccctggagcacaaggacttccgggagccccaggcttcccc
gggccgcaaggtgaccgaggttttcctggaaccccaggaaggccgggcctcccgggagag
aagggcactgtcggccagcccggaatcggatttccagggccccctggccccaaaggtgtt
gacggcttgcctggggacgtggggcctcctggcagtccaggccgcccggggttcaatggc
ttacccggcaatccgggggtgcccggccaaaagggggagccgggagttggtctgccagga
ctcaaaggcttgccaggcattcccggcattcccggcacacccggggagaaggggaacgtc
gggggaccgggcgtcccgggagagcacggtgctgtcggccccccaggccttcagggactc
agaggtgacccagggccgcctggattacaaggtcccagaggagctccaggagcccctgga
gtcggcccgcccggcgcgatgggaccccctggaggacagggaccaccagggtcctcaggc
cctcccggagtgaaaggagagaagggcttccccggatttccaggcctggacatgccaggt
cccaaaggagataaagggtcccaagggctaccaggcctgacgggacagtcggggctccct
ggtctccccggacagcagggcacacctggcgttcctgggtttccaggtcccaagggggag
atgggcgtcatggggaccccagggcagcccggctccccaggaccagcgggcctgccagga
ttaccaggagagaaaggggaccacggcttcccgggctcctcggggccccggggtgaccct
ggcttcaagggggacaaaggcgacgtgggtctccccggcaagccgggctccatggatgag
gtgcacatgggcagcatgaagggccagaagggagaccaaggagagaaagggcaaactgga
ccaaccggcgagaaggggtcccggggcgaccccggaaccccaggagtgcctggaaaggat
ggccaggccgggcagcccgggcagccaggaccgaaaggggacccgggcataggcggaacc
ccgggcgctccaggtctccctggacccaaaggatcggttggtggaatgggcctgccagga
acgcccggagaaaagggggtgcctggaatccccggcccgcagggcgtccctggcttaccc
ggggagaagggagcaaaaggagagaaaggacacgcgggcctacctggcattggaattccg
ggccgtcctggggacaagggagatcaaggggtcacaggctttccggggagtcctggagag
aagggagagaaaggaagcgctggcatcccgggggtccccggctccccaggccccaaagga
tcgccggggagtgttggctacccaggaagccctggattgcccggagaaaaaggggacaaa
ggtctcccaggatcggacggcattcccggcatcaagggagaagcaggtcttcctgggaag
cccggccccacgggccccgctggccagaaaggggagcccggcagtgatggaatcccgggg
tcggcgggagagaagggtgaaccaggtctgcccggaagaggattcccagggtttccaggg
gccaaaggagagaaaggttcaaagggcgacgtgggtttcccgggacaagccggcagccca
ggcatccccgggtccaaaggagagcaaggattcatgggtcccccggggccgcaaggacag
ccgggcttacctggagctccaggccacgctgtggagggacccaagggagaccggggccca
cagggtcagcccggcctgccagggcttccgggacctatggggcctccggggctccctgga
cttgacggactcaaaggtgacaaaggaaacccaggctggccgggggcccccggaacccca
gggcccaagggagagccaggattccagggcctgcctgggattggtggctcgccagggatc
acgggctcgaagggtgacatggggcctccaggagtgccgggatttcaaggtcagaaaggc
ctccctggcctgcagggcgtgaagggggatcaaggtgaccaaggcttccccggaagtaga
ggccttcccggtcccccagggcccccgggaccctacgacatcatcaaaggggagccaggg
cttcctggccccgagggtcctgcaggtgtaaaggggctcccagggcctccaggccccaaa
ggacagcaaggcgtgacgggatccgtgggcttacccggaccgcctggtgttcctggtttt
gatggcgcccctggccagaaaggagagacgggacccttcggtccccctggtccacgaggg
ttcccgggcccgccaggccccgacggcttgccaggatccatgggccccccgggcaccccg
tctgtggaccacggcttccttgtgaccaggcacagtcagacaacagatgacccacagtgt
cctcctgggaccaaaattctgtaccacgggttctccttgctctacgtgcaaggcaacgaa
cgggcccacggccaggacctaggcacggccgggagctgcctgcgcaagttcagtacgatg
cccttcctcttctgcaacatcaatgacgtgtgcaactttgcctcccggaacgactactcc
tactggctgtccacgcccgagcccatgcccatgtccatggcgcccatcgccggggacaac
atccggccgttcatcagcaggtgtgcggtgtgtgaggcgccagccatggtgatggccgtg
cacagccagaccatccagatcccgccgtgccccaatggctggtcctccctctggattggc
tactccttcgtcatgcacaccagcgccggcgctgaaggctccggccaggccctggcgtcc
cccggctcttgtctggaggagttccgcagcgcaccgttcatcgagtgccacggccgcggg
acgtgcaactactacgccaacgcttacagcttctggctggccacgatcgagaggagtgag
atgttcaagaagcccacgccgtccaccttgaaggccggggagctgcgcacacacgtcagc
cgctgccaagtctgcatgaggagaacgtaa
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