Neogale vison (American mink): 122907867
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Entry
122907867 CDS
T08764
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122907867 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nvs01009
]
122907867 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nvs04515
]
122907867 (PCDH20)
Protein phosphatases and associated proteins [BR:
nvs01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122907867 (PCDH20)
Cell adhesion molecules [BR:
nvs04515
]
Cadherins
Protocadherins
122907867 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
122907867
NCBI-ProteinID:
XP_044106621
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All DBs
Position
5:complement(122574126..122577919)
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AA seq
697 aa
AA seq
DB search
MFTLDVEENENGERTPYLIVMGLLDRETQDQYVSIIIAEDGGSPPLLGSATLTIGITDIN
DNCPLFTDSQINVTVFGNATVGTPVAAVQAVDRDLGTNAQITYAYSQKVPQASKDLFHLD
ETTGVIKLFSKIGGSVLQTHKLTILANGPGCIPAVTTALVTIIKVIFRPPEIVPRYIANE
VDGIVYLKELEPINTPIAFFTIRDPEGKYKVNCYLDGEGPFRLSPYKPYNNEYLLETTKL
MDYELQQFYEIAVVAWNSEGFHVKKIIKVQLLDDNDNAPIFLQPLLELTIEENNAPNAFL
TKLYATDADSGERGQVSYFLGPDAPSYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDS
GKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGRNGWV
ALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPALSSTAKITILLLD
INDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPES
FRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIE
SLLRKEPEINIEEKEPQISIEPTHRKVESVSCVPTLVALSVISLGSLTLVTGMGIYICLR
RGKKHHREDENLEVQIPLKGKIDLHMRERKPMAISNI
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgttcacgctggatgtggaggagaatgagaatggggagcgcaccccttacctaattgtc
atgggactgctggatagggagacccaggaccagtatgtgagcatcatcatagcagaggat
ggtgggtctccaccactgctgggcagcgccactctcaccatcggcataactgacattaat
gacaattgccctctcttcacagactcacagatcaatgtcactgtgtttgggaatgctaca
gtgggcacaccggttgcagctgttcaggctgtggatagagacttgggaaccaatgctcag
atcacgtacgcttacagccagaaagttccacaagcatccaaggatttattccatctggac
gaaaccaccggagtcattaaacttttcagtaagattgggggaagtgttctgcaaacgcac
aagctcaccatccttgctaacgggccaggctgcatccctgctgtgaccacagcactggtg
accatcatcaaagtcattttcagaccacctgaaattgttcctcgttatatagccaatgag
gtagatggtattgtttacctgaaagaactggagcccattaacactccaattgcattcttc
accataagagatccagaaggtaaatacaaggtgaactgctacctggacggtgaaggacca
tttaggttatcaccttacaaaccatacaacaatgaatatttgctggaaaccacaaaacta
atggattatgagctacagcagttctatgaaatagctgtggtggcctggaactcagaggga
tttcatgtcaaaaaaattattaaagtgcaacttttagatgacaatgacaatgctcctatt
ttcctgcaacccttgctggaactaactattgaagaaaacaatgcgcccaatgcctttttg
acaaagttgtacgcgacggatgcggacagtggagagagaggccaagtttcctatttcctg
ggacctgatgccccctcatatttttccttagacagtgtcacaggaattctgacagtttcc
actcagctggaccgagaagagaaagaaaagtataggtacacagtcagagccgttgactct
gggaagccacccagagaatcagttgccactgtggctctcaccgtgctggataaaaatgac
aacagccctaggttcatcaacaaggacttcagcttttttgtgccggaaaactttccagga
tatggtgaaattggggtaattagtgtcacagatgctgatgctggacgaaatggttgggta
gccctctcggtggtgaaccagagtgatatttttgtcatagacacaggaaagggcatgttg
agagctaaagtctctttggacagagagcagcaaagctcctatactttgtgggtcgaagct
gttgatgggggtgagcctgccctctcttcgactgcaaaaatcacaattctccttctagat
atcaatgacaaccctcctctggttttatttcctcagtccaacatgtcctacctgttggta
ctgccttctactctccccggctccccagttacagaggtctatgctgttgacaaagacacg
ggcatgaacgctgtcatagcttacagcatcataggaagaagaggtcctaggcctgagtcc
tttaggattgaccctaaaactggcaatattactttggaagaggcattgctgcagacagac
tatggacttcatcgtttactggtgaaagtgagcgaccatggttacccagaacctctccat
tccacagtcatggtgaacttatttgtcaatgacactgtcagtaatgagagctacattgag
agtcttctaagaaaggaaccagaaatcaacatagaggagaaagaaccacagatctcaata
gaaccaactcatcggaaagttgagtctgtgtcctgtgtgcccactctagttgctctctct
gtaataagcttgggttctctcacacttgtaacagggatgggcatatacatctgcttaagg
agagggaaaaagcatcacagggaagacgaaaatttggaagtacaaattccactcaaagga
aaaattgacttgcatatgagagagaggaaaccaatggctatttctaatatttga
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