Neogale vison (American mink): 122908226
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Entry
122908226 CDS
T08764
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
nvs
Neogale vison (American mink)
Pathway
nvs04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
122908226 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nvs04147
]
122908226 (COL18A1)
00535 Proteoglycans [BR:
nvs00535
]
122908226 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
nvs00536
]
122908226 (COL18A1)
Exosome [BR:
nvs04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122908226 (COL18A1)
Proteoglycans [BR:
nvs00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122908226 (COL18A1)
Glycosaminoglycan binding proteins [BR:
nvs00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122908226 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
122908226
NCBI-ProteinID:
XP_044106721
LinkDB
All DBs
Position
6:complement(1022310..1104048)
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AA seq
1312 aa
AA seq
DB search
MAPRWPWLRPRSRSLLDVLAALVLLLGVRAASAEPETLGAEVGLLQLLGEPPPQQVTQVD
DPDVGPAFVFGPDANGGQAARYHFPGRFFRDFSLHFHVRPATEDAGVLFAVTDAAQAVVS
VGVKLSGVRDGHQQIQLLYTEPGAARTHTAASFRLPAFTGQWTRFALSVDGATAALFVDC
ELFQRVPLARSPRGLELEPGAGLFVAQAGGADPDKFQGAIAELRVRGDPHVSSLHCLEED
DEDSGGASGDFGSGLEETQEPLREPSVSAVKPRLSSRERGPGPLSKPSLPEAPPVTSPPL
AAGGNEEDSRTEEMEEETTVSALAARTLPSLDLVTAGSVWSLGGGLEEGPAARSPEAPPV
PGPQGPPGPPGPPGKDGIPGRDGKPGDPGEDGRPGNPGPQGFPGTPGDAGPKGEKGDPGV
GPRGPPGPQGPPGPPGPSFGHDKLTFIDMEGSGFGGDLESLRGPRGYPGPPGPPGVPGLP
GEPGRFGMNSSDVPGPAGLPGVPGRNGPPGLPGTPGPPGPPGRDGGPGKTGQKGSPGDAG
APGPKGDKGDPGPAGAPGENGLAGAPGPAGPPGPPGPPGPPGPGLAAGFDDMEGSGVPFW
STAQGASGPQGPAGPPGVKGDPGVTGPPGAKGEVGADGPPGFPGLPGREGTAGAQGPKGE
KGTQGEKGEPGRDGVGQPGLPGPPGPPGPVVYLSEQDRVLAGVPGPEGRPGFAGFPGPAG
PKGDLGSKGQQGLPGPKGEKGEPGPVFSRDGSMLAPGQKGAKGEPGFRGPPGPYGRPGHK
GEIGFPGRPGRPGMNGLKGEKGEPGHASVGFGVRGPPGPPGPPGPPGPPGVPIYDSNAFT
ESGRPGAPGLPGLQGPSGPKGDKGDVGPPGPPGQFPLDLLPLEAEMKGEKGDRGDPGPKG
ERGEPGGGGFFGSSVPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGHEGRQGPPG
PPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGTMGTSSGVRIWATYQTMLDKVPE
VPEGWLIFVAEREELYVRVRGGLRKVLLEARTPLPRGTDNEVAALQPPAGNPYPRRELTH
STVRPWRADDILASPPRLPDPQPYPGAPHHGSYRHFQPARPTGGPTHSHTHQDYQPVLHL
VALNSPQPGGLRGIRGADFQCFQQARAAGLPGTFRAFLSSRLQDLYSVVRRADRTGVPIV
NLRDEELFPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTD
SYCETWRTEAAGVTGQASSLLAGRLLEQKAASCHHAFIVLCIENSFMTSSSK
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgaggtggccttggctgcggccgcggtcgcggagcctcctggacgtgctcgcc
gcgctggtcctgctgctcggagtgcgcgcggcctccgcggagccagaaactctgggcgcg
gaggtggggctcctgcagctgctcggagagcccccgccccagcaggtgacccaggtggac
gaccccgacgtggggccggccttcgtcttcggcccggacgccaacggcggccaggccgcc
cgctaccacttccccggccggttcttccgcgacttctcgctgcacttccacgtccggccc
gccaccgaggacgcgggggtgctgttcgccgtcacggacgcggcgcaggcggtggtctcc
gtgggcgtgaagctgtcgggcgtgcgtgacgggcaccagcagatccagctgctgtacacg
gagccgggggccgcgcggacccacacggccgccagcttccgcctgccggccttcaccggc
cagtggacgcgctttgccctcagtgtggacggcgcgaccgcggcgctgttcgtggactgc
gagttgttccagcgggtgccgttggcgcgctccccgcggggcctggagctggagcccggc
gcaggcctcttcgtggcccaggccggaggagcggaccctgataagttccagggggcgatc
gcagagctgagggtgcgcggggacccccatgtgagctccctgcactgtctggaggaggac
gacgaggacagcggcggggcgtccggagacttcgggagcgggctggaggagacccaggag
cccctcagggagccgtcggtgagtgccgtgaagccgaggctgtcctcccgggagcgaggg
ccgggtccgttgtccaaacccagcctccctgaggctcccccggtcacttctccacccttg
gctgcgggcgggaatgaggaagattccagaacggaagaaatggaggaagaaaccacggtg
tctgcgttggcagctcggaccctccccagcttggatctggtcaccgcagggagcgtttgg
agcctcgggggcggcctggaagagggtcctgccgcgcggagccctgaggcaccgcctgtt
cctgggccgcagggcccccctggccccccagggccaccagggaaggatggcatccctgga
agggacggcaagccgggggaccccggtgaagacgggagaccgggcaaccctgggccacag
ggcttccccgggaccccgggagacgcgggccccaagggcgagaagggggaccctggggtc
gggccgagaggacctccaggaccccaagggcctccagggccaccaggaccctccttcggg
catgacaagctgaccttcatcgacatggagggctccgggttcggcggagacctggagagc
ctccggggccccagaggctaccccggccccccgggacccccaggcgtcccaggcctgccc
ggagagccaggccgcttcggcatgaacagctcagacgtgccaggacccgccggcctccct
ggtgtgcccgggcggaacgggccccctgggcttcctggaaccccgggaccgccaggccct
ccaggaagagacgggggaccggggaagacgggccagaaaggcagccccggtgacgcgggc
gccccaggacctaagggagacaagggtgaccccggccccgctggcgctcctggggagaat
ggcttggcaggagcccccggaccagccggaccaccagggccccccggtccccctgggcca
ccgggaccaggactcgccgcagggtttgatgacatggaaggctccggggtacccttctgg
tcgacggctcaaggagccagcgggcctcagggtcccgccggcccgcccggggtcaagggg
gatcccggagtaaccggaccgccgggcgccaagggagaagttggggctgacggacctcct
ggattccccggcctccctggcagagagggcacagctggagcccagggacccaaaggagaa
aaagggacccagggagagaaaggcgaaccagggagggacggagtgggacagcccggcctc
cccggaccccccggacccccggggcctgtcgtctacctgtcggagcaggatagagtgctg
gccggcgtgcctggacccgagggccggccggggttcgcgggctttcccggaccagctggg
ccgaagggagatctgggctcaaaaggccagcagggcctcccgggacccaagggcgagaag
ggcgagcccggcccggtcttcagccgcgacggcagcatgctggcgcccggccagaaaggg
gccaagggagagcctggcttccgaggacccccgggtccctacggacggccggggcacaag
ggagagattggcttccccgggcggccgggtcgccccgggatgaacggattgaagggggag
aagggggagccaggacacgccagcgtcggcttcggtgtgaggggtccacccggtccccca
gggcctccggggcccccagggcctcctggggtccccatctatgacagcaacgccttcacg
gagtccggccgccctggagccccaggattgccagggctccaggggccttctggacccaag
ggtgacaaaggagacgtgggccctccaggaccaccagggcagttcccgctggacctcctc
ccgctggaggctgaaatgaagggggagaagggggaccgaggggaccctgggccaaagggc
gaacggggtgagcccgggggtggtggattcttcggctcaagtgtgcccggcccccccggc
ccgccaggctatcctgggattccgggtcccaagggagagagcattcggggccagcctggc
ccacctggacctcagggaccccctggcatcggccacgaggggcgtcagggaccccctggg
ccccctggacccccgggtcccccagggcccccttcctttcctggcccttaccggcaaacc
atcagtgttcccgggcccccaggcccacctgggccccctgggccccctggaaccatgggc
acgtcctccggggtgaggatctgggccacgtaccagaccatgctggacaaggtgcctgag
gtgccggagggctggctcatcttcgtggccgagagggaggagctgtacgtccgggtccgc
ggcgggctgcggaaggtcctgctggaggcacggacgccactcccacgcgggacggacaac
gaggtggccgccttgcagccccctgcgggcaacccatacccccgacgggagctcacccac
tccacggtgcggccctggcgggcagatgacatcctggccagccccccgcgtctgccggac
ccgcagccctaccccggggccccacaccacggctcctaccggcacttccagccggctcgc
cccaccggcgggcccacccacagccacacccaccaggactaccagcctgtgctgcacctg
gtggccctgaacagcccccagccgggcggcctgcgcggcatccgcggggccgacttccag
tgcttccagcaggcgcgcgccgcagggctgcccggcaccttccgcgccttcctgtcctct
cggctgcaggacctctacagcgtggtgcgccgggccgaccgcaccggcgtgcccatcgtc
aacctcagggacgaggagctgttccccagctgggaggccttgttctcgggctccgagggc
cagctgaagcctggggcccgcatcttctctttcgacggcagagacgtcctgcagcacccg
gcctggccccagaagagcgtgtggcacggctcagaccccagcgggcgccggctgacggac
agctactgcgagacgtggcggacagaggctgcgggcgtcacgggccaggcgtcctccctg
ctggccggccggctgctggagcagaaggccgcgagctgccaccacgccttcatcgtgctc
tgcatcgagaacagcttcatgacctcctcctccaagtag
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