Neogale vison (American mink): 122908343
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Entry
122908343 CDS
T08764
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
nvs
Neogale vison (American mink)
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvs03021
]
122908343 (SCAF4)
03041 Spliceosome [BR:
nvs03041
]
122908343 (SCAF4)
Transcription machinery [BR:
nvs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122908343 (SCAF4)
Spliceosome [BR:
nvs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
122908343 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122908343
NCBI-ProteinID:
XP_044106962
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All DBs
Position
6:12755376..12822631
Genome browser
AA seq
1140 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSEPSQATTNSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPAQP
PEQKAVFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDGATAAAAPPAMAVAPPAPSA
TTPAPAPAASPPQAPFGFPGDGMQQPAYTQHQTMDQFQPRMMTMQQDPVHHQVPLPPNGQ
MPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQASFQAQSEPLTQKAHQEMEVEQPCIQEVK
RHMSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDRE
KERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGC
AYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWD
KVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHTEPVSPIPKPLPVP
VPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPPPPPFL
RPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPI
PTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAP
STGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPPPHGM
KGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQQPQPQQPPPPQPQPQQPPPAQQQ
QQPQPQPPPPAQQQPQPFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGSRNDDRDN
SNRERREWGRRSPDRDRHRDLEERNRRSSGHRERDSRDRESRRDKEENRGKEKPEVTDRA
GGNKTAEPPISQVGTVDTVSELGKGESESAVVKPSEELPAEATSSVEPEKDSGSAAEAPR
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagctcttttcacttatggatatgaaacctccc
atctctcgagccaagatgattcttatcactaaagctgctattaaagctattaagctttat
aagcatgtagttcaaatagtagaaaagttcatcaaaaagtgtaaaccagaatacaaggtt
ccaggattatatgtaattgactcaattgtgcgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataaccgccacattccaatatttatat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctgaacctttggcaaaaaaat
ggagtattcaaaattgaaattattcagcctcttttggacatggctgcaggaaccagtaat
gccgccccagtagcagaaaatgttactaataatgaaggttcacctccacctccagttaaa
gtttcttctgaaccgtcccaagccactacaaactctgtaccaactgtaccacagctgcct
agctctgatgcttttgctgctgtggcccaactgtttcagacaactcaaggtcaacagctt
cagcagatccttcagacttttcaacagcctccaaaaccgcagtcgccggccattgacaat
gccgtgatggctcaggtccaggctatcacagctcagttaaagaccgctcctgcacagccg
cctgaacaaaaagctgttttccccccacctgagcaaaaaactgcatttgacaagaagcta
ctcgatagatttgattatgatgatgagccagaggctgtggaggaatccaagaaggaagat
ggcgccaccgctgccgccgctccacctgccatggctgttgcgcctcctgcaccctccgct
accacgccggcccccgcacctgccgcttcccctccacaggcaccctttgggtttcctgga
gatggcatgcagcagccagcatacacacagcatcagactatggatcagtttcagcctcga
atgatgacgatgcagcaggacccagtgcatcatcaggttccacttcctcctaacggacag
atgccaggatttggccttcttcctacacctccatttcctcccatggctcagtctgtgatt
cctccaactccacctgtgcaacagcctttccaagcttcttttcaggcacagagtgaacca
ctaacacagaaggcacatcaggaaatggaagtcgaacagccttgtattcaagaggttaag
cggcacatgtctgataacagaaagtcaagatctaggtcagcatccaggtcaccaaaaaga
aggcgatctcgatctggctctagatctcgaaggtcccgccatcgacgttctcgatctcgg
tccagagatagacgccgacattctcctagatctcggtcccaagaaaggcgagacagagaa
aaagaaagagaacgccgacaaaaaggccttccccaaatcaaaccagaaactgcaagtgtt
tgtagtactacactctgggtgggacagctggacaaaaggactactcaacaagatgttgcc
agtctcttagaagagttcggtccaattgaatcaattaatatgattcctcccagaggttgt
gcctatattgttatggttcataggcaagatgcctatcgtgccctgcagaaactgagccga
ggaaactataaagtaaaccagaaatccataaagattgcctgggctttaaacaaaggaata
aaggcagattataagcagtattgggatgtagaactgggtgttacttatattccgtgggac
aaagtcaagcctgaagaactggagagtttttgtgaaggaggaatgttggacagtgataca
cttaatccagattggaaaggaatccccaagaagcatgaaaatgaagttgctcaaaatgga
ggggcagaaacctcacatacagaaccagtatcacccatacctaaacctttaccagtgcct
gtcccgcctattcctgtccccgcacctataacagtgccacctccacaggtcccaccacat
cagccgggtcctcctgtagttggtgctctccagccacccactttcacgcctcccttgggc
attccccctccgggttttggtcctggtgttcctcctccaccacctcctccaccatttttg
cgcccaggatttaatccgatgcatttaccaccaggttttcttcctcctggacccccacct
cctataactccaccagtatccattcctcctcctcacactcctccaataagcatcccaaac
tctactatcgctggtataaatgaagacactacaaaagacttatctattggaaatcccatt
ccaacagtggtgtctggggctagaggaaacgccgagtctggtgacagtgtgaaaatgtat
ggctctgctgtgccacctgctgcacccacgaatctgcccacccctcctgtaacccagcct
gtttcacttcttggtactcaaggagttgcacctggtcctgtaattgggctccaggcacca
tccactggtcttctcggtgcccgacctggcctgatcccacttcagcgccctccaggaatg
cctccacctcacttacagaggttccctttgatgccacctcgtcccatgccgccgcatatg
atgcaccgaggtccccctccaggaccggggggctttggaatgccgccacctcatggaatg
aaaggcccctttccaccacatggcccctttgttcggcctggcggaatgccagggctcggg
ggcccagggccaggcccggggggtcctgaagacagagacggaaggcagcagcaaccccag
ccgcagcagcccccaccaccgcagccgcagccccagcagcccccgcccgcgcagcagcag
cagcagccgcagccgcagccgccgccgcccgcacagcaacaaccacagccgtttagaaat
gataacaggcagcagttcaattcaggtagagaccaagagaggtttggaagaagatctttt
ggaaatagggtggaaaatgaccgggaacggtatgggagccgtaatgatgatagagataat
agtaaccgtgaaaggagagagtggggaagaaggagccctgaccgggacaggcacagagac
ttggaagagagaaatagacgctctagtgggcatcgagagagagattctagagatagagag
tctcgtagagataaggaagaaaaccgaggaaaggagaagcccgaggtgacagacagggca
ggtggtaacaaaaccgctgaacctcccattagccaagtgggaaccgtagacactgtttca
gaacttggtaagggggagtctgagtctgccgttgtaaaaccttctgaagagctacctgct
gaggctacctcgtccgttgaacccgaaaaggattctggctcagcagcagaggctcctcgt
tag
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