Neogale vison (American mink): 122908354
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Entry
122908354 CDS
T08764
Symbol
LTN1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
nvs
Neogale vison (American mink)
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nvs03009
]
122908354 (LTN1)
04121 Ubiquitin system [BR:
nvs04121
]
122908354 (LTN1)
Enzymes [BR:
nvs01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122908354 (LTN1)
Ribosome biogenesis [BR:
nvs03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
122908354 (LTN1)
Ubiquitin system [BR:
nvs04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122908354 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
FANCL_C
zf-ANAPC11
zf-rbx1
RINGv
zf-RING-like
zf-RING_16
HipN
Motif
Other DBs
NCBI-GeneID:
122908354
NCBI-ProteinID:
XP_044106995
LinkDB
All DBs
Position
6:15432764..15499952
Genome browser
AA seq
1766 aa
AA seq
DB search
MGGKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGFGTSQSDLGYVPAIQGAEEIDSL
VDSDFRMVLRKLSKKDVTTKLKAMQEFGTMCTERDTEIVKGVLPYWPRIFCKISLDHDRR
VREATQQAFEKLILKVKKHLAPYLKSLMGYWLMAQCDTYTPAASAAKDAFEAAFPPSKQP
EAIAFCKDEITSVLQDHLIKETPDTLSDPQTVPEEEREAKFYRVVTCSLLALKKLLCLLP
DNELDSLEEKFKSLLSQNKFWKYGKHSIPQIRSAYFELVSALCQRIPQLMKEEASKVSPS
VLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSAVVREGGRGLATIIY
PYLLPFISKLPQTITDPKLDFFKNFLTSVVAGLSTERIKTSFSECSAVISAFFECLRFIM
QQNLGEEEIEEMLVNDQLIPFIDAVLKDARLQDGQLFNHLAETLSSWEAKADVEKDDKKA
HSLDKVLLNFWERLSEICVEKINEPEADVKSVSGVSNLLQVLQKPKSSLKSNKKKVGKVR
FADELPESNKENEKCVSSEGENSESSELMTEPSLTHNCSELISPLRKKPLEDLVCKLAMM
SFNYVNEQKSEQHLRFLSTLLSSFSSTQVFKMLLGDEKQSTVKAKPLEIARLAQKNPAVQ
FLYQKLIGWLNEDPRKDAGFLVDILYSALRCCDNNMERKYILDDLIEGDLKWNSILQVIE
KACSSSDKHALVTPWLKGEILGEKLTSLADHLCSKDLESSGSSESYFSERWALLSLVLSQ
HVKNDYLIEEVYVERIIVKLHETLSKGKELSEAENNDLSVSFICDVAYNYFSSAKGCLLM
PSSEDLLLTLFQLCAQSKEKTHLPDFLICKLKNTWLSGVNLLIHQTGNTYKQSTFLRLSA
LWLKNQVQSSSLDIKSLQVLLSAVDDLLNALLESEDTNLLGVYIGSVMPSNSEWEKMRQS
LPMQWLHRPLLEGRLSLNYECFKTDFKEQDTKKLPSHLCTSALLSKMVLVALKKEIVLEN
NELEKIIAELLYSLQWYEELDNPPVFLTGFCEMLQKMNITYDNLCGLGNTSGLLQLLFNR
SMENGTLWSLIIAKLILSRSVSSDEVKRHYRRKEGFFPLTEGNMHTIQSLCPFLSKEDKK
EFIAQCIPPLLAWTKEDLCSTNGGFGHLAIFNSCLQTRSIDDGELLHGILKILISWKKDH
EDVFLFSCNLSEVSPEILGVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTNE
NQALYSVPLVQLFACVSCDLACELSAFFDSATPDTIGNLPVNLISEWKEFFSQGIHSLLL
PLLVTATEESEDKSETSFQNAMLKPMCETLTYIPKDQLLSQKLPSRLVAGQKTNLPEYLQ
TLLNTLAPLLLYRARPVQIAVYHMLYKLMPELPQYDQDNLKSYGDEEEEPALSPPAALMS
LLSTQEDLLENVLGCIPVGQIVTIKPLSEDFCYVLGYLLTWKLILTFFKAASSQLRALYS
MYLRKTKSLNKLLYHLFRLMPENPTYAETAVELSNKDPKTFFTEELQLSIRETSTLPYHI
PHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNIVDRFTSKYVSNVLSFQEISSVQTSTQL
FNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSITVESGKRVGVAVQQWRNWM
LQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKK
FHSACLYKWFTSSNKSTCPLCRETFF
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggaagaacaagcagcggaccaagggaaacctgaggccttcaaacagtggccga
gctgcagaactgcttgccaaagaacagggaacggtgcctggatttattggttttggaaca
tctcagagtgacctaggctatgttcctgctattcaaggagctgaagaaatcgacagtctt
gtagattctgatttccgaatggtgctgcggaaactttctaagaaagatgtcacgacaaaa
ttaaaagctatgcaggaatttggaaccatgtgtacagagagagacacagaaattgtgaaa
ggagtccttccttactggccaagaattttctgcaaaatttcacttgaccatgatcgccgg
gttcgagaagccacacagcaggcttttgaaaaacttattcttaaagtgaagaaacacttg
gctccttacttaaaaagtttaatgggctattggctaatggctcagtgtgatacttacaca
ccagctgcatctgcagcaaaagatgcctttgaagcagctttccctccaagcaagcaacct
gaagccatagcattttgtaaggatgaaattactagtgtgctgcaggatcatcttataaaa
gaaacacctgatacactcagtgacccacaaacggttccagaggaagaaagagaagctaaa
ttctatcgggttgtaacttgttccttattggcattaaaaaaactgctttgcctgttacct
gataatgagcttgattctctggaggagaaatttaagtctcttttatcacagaataagttt
tggaagtatggaaaacacagtatacctcagatccgctcagcttattttgagttagtttct
gctttgtgccagcgtattccacagttgatgaaagaggaagcatctaaagtgagcccgtct
gttctacttagcattgatgacagtgaccccattgtgtgcccagctctctgggaagctgta
ctttatacactcacaactattgaggactgttggcttcatgtaaatgcaaaaaaaagtgtg
tttccgaagctgtcagctgtggtccgtgagggtggtcggggtctggctactatcatatat
ccttatcttttgccatttatcagcaaacttcctcagaccattacagatccaaagttggat
tttttcaaaaatttcctcacctctgttgttgcagggctatccacagaaagaataaaaacc
agcttttcagaatgctcagcagtaatatcagctttttttgaatgcttacgtttcatcatg
caacaaaacttaggtgaagaagaaattgaagagatgctcgtcaatgaccagttgattcct
tttattgatgcagttctcaaagacgcaagattgcaagatgggcagctgtttaaccattta
gcagaaactttaagttcctgggaagccaaagcagatgtggaaaaagatgataaaaaagct
cacagtttggacaaagtgctgctaaatttttgggaaagactgtcagagatctgtgtggag
aaaatcaatgagccagaagctgatgtgaaatccgtgtcaggtgtatctaacctgctacag
gtccttcagaagccaaaaagctcgctgaagtcgaataaaaaaaaagttggtaaggttaga
tttgctgatgagctgcctgaaagtaataaggagaatgaaaaatgtgtttcctcagaaggt
gagaacagtgaaagctctgaattaatgactgaaccttctctcactcataattgttcagag
cttatatcgccgctaaggaagaaacctttggaagacttggtctgtaaactagcaatgatg
agttttaactatgtcaatgagcaaaagtcagagcaacatctaaggttcctttctactctg
ctcagctctttctcttcaacccaagtatttaaaatgctgttaggtgatgaaaaacagagt
actgtcaaagccaaacctcttgaaatagccagacttgcacaaaaaaatcctgcagtgcag
tttttataccagaaactgattggttggctaaatgaagatccaaggaaggatgctggtttc
ttggtggatattttgtacagtgccctccgttgctgtgacaataatatggaaagaaaatat
atcttggatgatctcattgagggggatctgaagtggaattctattcttcaggtcatcgaa
aaggcatgttctagttcagataaacatgctttagtaactccttggctaaaaggagaaatc
cttggagagaagctgacatccttggcagatcacctttgtagtaaggacttggaatcctca
ggatcttctgaatcttacttctcagaaagatgggctcttctaagcttggtgttatcccaa
catgttaaaaatgattacttgattgaagaagtatatgtggagagaattattgttaaactt
catgaaactttatccaaaggaaaggaattgtcagaagctgaaaataatgacttgtcagtg
tcttttatctgtgatgtggcctataactatttcagctcagcaaaaggatgcttgctaatg
ccatcatctgaagacttattattaactctctttcagttatgtgctcagagcaaagaaaaa
acacatttgccagactttcttatctgtaaactgaaaaatacttggctctctggtgtgaat
ttattgatccaccaaactggcaatacgtataaacagagtaccttcctacgtttgtctgct
ctgtggctgaagaaccaagttcagtcttcatctttggatatcaaaagtcttcaggtcctc
ttgtctgctgttgatgacttgctaaatgcacttttagaaagtgaggatactaatcttctg
ggagtatatattggaagtgtaatgccaagtaacagtgaatgggaaaagatgagacagtct
cttcctatgcagtggttgcatagacctcttttagaaggaagattgagtttgaattatgag
tgtttcaaaacagattttaaagaacaagatacaaagaaacttcccagccatttgtgtact
tcagcattattgagcaaaatggtattagttgcactgaaaaaggaaatagtcctagaaaat
aatgagcttgagaaaataattgcagaactgctctattcactgcagtggtatgaggaatta
gataatccacctgtttttctaactggattttgtgaaatgcttcaaaagatgaatattaca
tatgataacttatgtggacttggtaatacttctggccttttacagctgttatttaacaga
tccatggaaaatggcactctttggtctctcattattgctaagttgatcctttcccgaagt
gtttcatcggatgaagtaaaacggcattacaggagaaaagaaggttttttcccactaaca
gaaggtaatatgcataccattcaaagtctctgtccatttttgtcaaaagaagacaagaaa
gaattcattgctcaatgtatacctccccttttggcctggactaaggaagatctttgcagt
actaatggaggttttggacatcttgccattttcaattcttgcctgcaaaccagaagcata
gatgatggggagctactacatggtatattaaaaattctgatatcctggaagaaagatcat
gaagatgtttttcttttcagttgtaatctgtcagaagtaagtccagagatactaggtgta
aatatagaaataatccggttcctttccctgtttctgaaatactgctcatctcctttggca
gagagtgaatgggacttcatcatgtgctccatgttggcttggttggagacaacaaatgaa
aatcaggcattgtattctgttccacttgtacaactgtttgcctgtgtcagctgtgatttg
gcctgtgagctcagtgctttttttgattctgcaactccggataccattggcaatctccct
gtaaatctaatcagtgaatggaaagaatttttttcccaaggcatccacagtttgctttta
cctcttttggtgactgctacagaagaaagtgaagataaatctgaaacatcctttcagaat
gcaatgctgaagcccatgtgtgaaacattaacatatatcccaaaggaccagctgttgagt
caaaaactcccttcaagattggttgctggccaaaaaacaaacttaccagagtatctccag
actttgttaaatacattggccccattactcctctacagagctcggcctgtgcaaattgct
gtttaccatatgctatacaaattgatgcctgaattaccacaatatgatcaggataatcta
aagtcatatggagatgaagaagaagaaccagccttgtcaccaccggcagcgttgatgtct
cttcttagcactcaagaggacttgctagaaaatgttttggggtgtattcctgttggacag
atagttactattaagccactgagtgaagacttctgctatgttctgggataccttctcacc
tggaaattaatactcactttcttcaaagctgcttcatctcagcttcgggcactgtactca
atgtacctccgaaaaacaaaaagtttgaataaattgctctatcacctgttcaggcttatg
ccagaaaatccaacttatgcagagaccgctgttgagctctcaaataaggatcctaaaaca
ttctttacggaagagctccagttgagtattagagaaacatcaactcttccctaccatatc
ccacacttggcttgttcagtctatcatatgacattaaaagacttgcctgccatggttagg
ctatggtggaatagtagtgagaagcgtgttttcaatatcgtagatagatttacaagcaag
tatgtcagcaatgttctttcctttcaagaaatttcttccgtgcaaacaagtacacaacta
tttaatggcatgacggttaaagctcgagctactactagagaagtgatggctacttacact
attgaggacatagttattgaacttataatacagctgccttccaattaccccttgggttca
ataactgtggagagtgggaagagagtcggtgtggctgttcagcagtggcggaactggatg
ctgcagttaagcacttacctcacccatcagaatggaagtattatggaaggcctagcttta
tggaaaaataatgtagacaaacgttttgagggtgttgaagattgcatgatatgtttctca
gtcattcatggcttcaactattctcttcccaaaaaagcctgtagaacatgcaagaaaaag
ttccattcagcctgcttgtacaaatggtttacgtctagcaacaaatccacttgtccactc
tgtcgtgagacctttttctga
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integrated database retrieval system
